Structure of TDP1 complexed with compound IB01
Lountos, G.T., Zhao, X.Z., Barakat, I., Wang, W., Agama, K., Al Mahmud, M.R., Pommier, Y., Burke, T.R.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tyrosyl-DNA phosphodiesterase 1 | 461 | Homo sapiens | Mutation(s): 0  Gene Names: TDP1 EC: 3.1.4 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NUW8 (Homo sapiens) Explore Q9NUW8  Go to UniProtKB:  Q9NUW8 | |||||
PHAROS:  Q9NUW8 GTEx:  ENSG00000042088  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NUW8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
XK6 (Subject of Investigation/LOI) Query on XK6 | C [auth A] D [auth A] E [auth A] G [auth B] H [auth B] | 8-(fluorosulfonyl)-4-oxo-1,4-dihydroquinoline-3-carboxylic acid C10 H6 F N O5 S HRNLMDOGOLJRKZ-UHFFFAOYSA-N | |||
EDO Query on EDO | F [auth A], K [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 49.958 | α = 90 |
b = 105.022 | β = 90 |
c = 193.038 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | -- |