Nub1 traps unfolded FAT10 for ubiquitin-independent degradation by the 26S proteasome
Arkinson, C., Dong, K.C., Gee, C.L., Costello, S.M., Marqusee, S., Martin, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome non-ATPase regulatory subunit 12 | A [auth W] | 456 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O00232 (Homo sapiens) Explore O00232  Go to UniProtKB:  O00232 | |||||
PHAROS:  O00232 GTEx:  ENSG00000197170  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O00232 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S protease regulatory subunit 8 | B [auth C] | 406 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62195 (Homo sapiens) Explore P62195  Go to UniProtKB:  P62195 | |||||
PHAROS:  P62195 GTEx:  ENSG00000087191  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62195 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome non-ATPase regulatory subunit 4 | C [auth b] | 377 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P55036 (Homo sapiens) Explore P55036  Go to UniProtKB:  P55036 | |||||
PHAROS:  P55036 GTEx:  ENSG00000159352  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P55036 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome non-ATPase regulatory subunit 8 | D [auth d] | 350 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P48556 (Homo sapiens) Explore P48556  Go to UniProtKB:  P48556 | |||||
PHAROS:  P48556 GTEx:  ENSG00000099341  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P48556 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome non-ATPase regulatory subunit 2 | E [auth f] | 908 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13200 (Homo sapiens) Explore Q13200  Go to UniProtKB:  Q13200 | |||||
PHAROS:  Q13200 GTEx:  ENSG00000175166  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q13200 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
NEDD8 ultimate buster 1 | F [auth g] | 605 | Homo sapiens | Mutation(s): 0  Gene Names: NUB1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y5A7 (Homo sapiens) Explore Q9Y5A7  Go to UniProtKB:  Q9Y5A7 | |||||
PHAROS:  Q9Y5A7 GTEx:  ENSG00000013374  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9Y5A7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome regulatory subunit 4 | G [auth B] | 440 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62191 (Homo sapiens) Explore P62191  Go to UniProtKB:  P62191 | |||||
GTEx:  ENSG00000100764  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62191 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome regulatory subunit 7 | H [auth A] | 433 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P35998 (Homo sapiens) Explore P35998  Go to UniProtKB:  P35998 | |||||
PHAROS:  P35998 GTEx:  ENSG00000161057  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P35998 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome regulatory subunit 6B | I [auth D] | 418 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P43686 (Homo sapiens) Explore P43686  Go to UniProtKB:  P43686 | |||||
PHAROS:  P43686 GTEx:  ENSG00000013275  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P43686 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S protease regulatory subunit 10B | J [auth E] | 389 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62333 (Homo sapiens) Explore P62333  Go to UniProtKB:  P62333 | |||||
GTEx:  ENSG00000100519  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62333 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome regulatory subunit 6A | K [auth F] | 439 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P17980 (Homo sapiens) Explore P17980  Go to UniProtKB:  P17980 | |||||
PHAROS:  P17980 GTEx:  ENSG00000165916  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P17980 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit alpha type-6 | L [auth G] | 246 | Homo sapiens | Mutation(s): 0  EC: 3.4.25.1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P60900 (Homo sapiens) Explore P60900  Go to UniProtKB:  P60900 | |||||
PHAROS:  P60900 GTEx:  ENSG00000100902  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60900 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit alpha type-2 | M [auth H] | 234 | Homo sapiens | Mutation(s): 0  EC: 3.4.25.1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P25787 (Homo sapiens) Explore P25787  Go to UniProtKB:  P25787 | |||||
PHAROS:  P25787 GTEx:  ENSG00000106588  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P25787 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit alpha type-4 | N [auth I] | 261 | Homo sapiens | Mutation(s): 0  EC: 3.4.25.1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P25789 (Homo sapiens) Explore P25789  Go to UniProtKB:  P25789 | |||||
PHAROS:  P25789 GTEx:  ENSG00000041357  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P25789 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit alpha type-7 | O [auth J] | 248 | Homo sapiens | Mutation(s): 0  EC: 3.4.25.1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O14818 (Homo sapiens) Explore O14818  Go to UniProtKB:  O14818 | |||||
PHAROS:  O14818 GTEx:  ENSG00000101182  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O14818 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit alpha type-5 | P [auth K] | 241 | Homo sapiens | Mutation(s): 0  EC: 3.4.25.1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P28066 (Homo sapiens) Explore P28066  Go to UniProtKB:  P28066 | |||||
PHAROS:  P28066 GTEx:  ENSG00000143106  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P28066 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit alpha type-1 | Q [auth L] | 263 | Homo sapiens | Mutation(s): 0  EC: 3.4.25.1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P25786 (Homo sapiens) Explore P25786  Go to UniProtKB:  P25786 | |||||
PHAROS:  P25786 GTEx:  ENSG00000129084  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P25786 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit alpha type-3 | R [auth M] | 255 | Homo sapiens | Mutation(s): 0  EC: 3.4.25.1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P25788 (Homo sapiens) Explore P25788  Go to UniProtKB:  P25788 | |||||
PHAROS:  P25788 GTEx:  ENSG00000100567  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P25788 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit beta type-7 | S [auth O] | 277 | Homo sapiens | Mutation(s): 0  EC: 3.4.25.1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q99436 (Homo sapiens) Explore Q99436  Go to UniProtKB:  Q99436 | |||||
PHAROS:  Q99436 GTEx:  ENSG00000136930  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q99436 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 20 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome non-ATPase regulatory subunit 1 | T [auth U] | 953 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q99460 (Homo sapiens) Explore Q99460  Go to UniProtKB:  Q99460 | |||||
PHAROS:  Q99460 GTEx:  ENSG00000173692  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q99460 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 21 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome non-ATPase regulatory subunit 3 | U [auth V] | 534 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O43242 (Homo sapiens) Explore O43242  Go to UniProtKB:  O43242 | |||||
PHAROS:  O43242 GTEx:  ENSG00000108344  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O43242 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 22 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome non-ATPase regulatory subunit 14 | V [auth c] | 424 | Homo sapiens | Mutation(s): 0  Gene Names: PSMD14 EC: 3.4.19 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O00487 (Homo sapiens) Explore O00487  Go to UniProtKB:  O00487 | |||||
PHAROS:  O00487 GTEx:  ENSG00000115233  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O00487 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 23 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome complex subunit SEM1 | W [auth e] | 70 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P60896 (Homo sapiens) Explore P60896  Go to UniProtKB:  P60896 | |||||
PHAROS:  P60896 GTEx:  ENSG00000127922  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60896 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 24 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome non-ATPase regulatory subunit 6 | X [auth Y] | 389 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15008 (Homo sapiens) Explore Q15008  Go to UniProtKB:  Q15008 | |||||
PHAROS:  Q15008 GTEx:  ENSG00000163636  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15008 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 25 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome non-ATPase regulatory subunit 7 | Y [auth Z] | 324 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P51665 (Homo sapiens) Explore P51665  Go to UniProtKB:  P51665 | |||||
PHAROS:  P51665 GTEx:  ENSG00000103035  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P51665 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 26 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome non-ATPase regulatory subunit 13 | Z [auth a] | 376 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UNM6 (Homo sapiens) Explore Q9UNM6  Go to UniProtKB:  Q9UNM6 | |||||
PHAROS:  Q9UNM6 GTEx:  ENSG00000185627  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UNM6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 27 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
26S proteasome non-ATPase regulatory subunit 11 | AA [auth X] | 422 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O00231 (Homo sapiens) Explore O00231  Go to UniProtKB:  O00231 | |||||
PHAROS:  O00231 GTEx:  ENSG00000108671  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O00231 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ATP (Subject of Investigation/LOI) Query on ATP | DA [auth B], FA [auth A], HA [auth D], JA [auth E], LA [auth F] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N | |||
ADP (Subject of Investigation/LOI) Query on ADP | BA [auth C] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
ZN (Subject of Investigation/LOI) Query on ZN | NA [auth c] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG (Subject of Investigation/LOI) Query on MG | CA [auth C] EA [auth B] GA [auth A] IA [auth D] KA [auth E] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | 1.21_5207 |
Funding Organization | Location | Grant Number |
---|---|---|
Howard Hughes Medical Institute (HHMI) | United States | -- |