Structural basis of RfaH-mediated transcription-translation coupling
Molodtsov, V., Wang, C., Zhang, J., Kaelber, J.T., Blaha, G., Ebright, R.H.(2024) Nat Struct Mol Biol 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2024) Nat Struct Mol Biol 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L21 | A [auth 0] | 103 | Escherichia coli | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for C3SSG2 (Escherichia coli) Explore C3SSG2  Go to UniProtKB:  C3SSG2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SSG2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L22 | B [auth 1] | 110 | Escherichia coli | Mutation(s): 0  Gene Names: rplV, eryB, b3315, JW3277 | ![]() |
UniProt | |||||
Find proteins for P61175 (Escherichia coli (strain K12)) Explore P61175  Go to UniProtKB:  P61175 | |||||
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61175 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L23 | C [auth 2] | 100 | Escherichia coli | Mutation(s): 0  Gene Names:  rplW, rplW_1, A5U30_004552, A8502_004023, A9X72_02185, ACN81_25520, ACU57_20960, AM464_09220, AW118_24900, AWP47_12645... | ![]() |
UniProt | |||||
Find proteins for C3SQV2 (Escherichia coli) Explore C3SQV2  Go to UniProtKB:  C3SQV2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SQV2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L24 | D [auth 3] | 104 | Escherichia coli | Mutation(s): 0  Gene Names:  rplX, A8502_004032, A9X72_02230, ACN81_25475, ACU57_21005, AM464_09175, AW118_24855, AWP47_12690, B6R15_004078, B6R31_004977... | ![]() |
UniProt | |||||
Find proteins for C3SQZ7 (Escherichia coli) Explore C3SQZ7  Go to UniProtKB:  C3SQZ7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SQZ7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein bL25 | E [auth 4] | 94 | Escherichia coli | Mutation(s): 0  Gene Names: rplY | ![]() |
UniProt | |||||
Find proteins for P68919 (Escherichia coli (strain K12)) Explore P68919  Go to UniProtKB:  P68919 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68919 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L10 | I [auth 9] | 165 | Escherichia coli | Mutation(s): 0  Gene Names: rplJ, b3985, JW3948 | ![]() |
UniProt | |||||
Find proteins for P0A7J3 (Escherichia coli (strain K12)) Explore P0A7J3  Go to UniProtKB:  P0A7J3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7J3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit beta | K [auth AA] | 1,342 | Escherichia coli | Mutation(s): 0  Gene Names: rpoB, groN, nitB, rif, ron, stl, stv, tabD, b3987, JW3950 EC: 2.7.7.6 | ![]() |
UniProt | |||||
Find proteins for P0A8V2 (Escherichia coli (strain K12)) Explore P0A8V2  Go to UniProtKB:  P0A8V2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A8V2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Transcription antitermination protein RfaH | L [auth AB] | 162 | Escherichia coli | Mutation(s): 0  Gene Names: rfaH | ![]() |
UniProt | |||||
Find proteins for C3SK02 (Escherichia coli) Explore C3SK02  Go to UniProtKB:  C3SK02 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SK02 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit alpha | M [auth AC], N [auth AD] | 329 | Escherichia coli | Mutation(s): 0  Gene Names: rpoA, pez, phs, sez, b3295, JW3257 EC: 2.7.7.6 | ![]() |
UniProt | |||||
Find proteins for P0A7Z4 (Escherichia coli (strain K12)) Explore P0A7Z4  Go to UniProtKB:  P0A7Z4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7Z4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit beta' | O [auth AE] | 1,407 | Escherichia coli | Mutation(s): 0  Gene Names: rpoC, tabB, b3988, JW3951 EC: 2.7.7.6 | ![]() |
UniProt | |||||
Find proteins for P0A8T7 (Escherichia coli (strain K12)) Explore P0A8T7  Go to UniProtKB:  P0A8T7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A8T7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit omega | P [auth AF] | 91 | Escherichia coli | Mutation(s): 0  Gene Names: rpoZ, b3649, JW3624 EC: 2.7.7.6 | ![]() |
UniProt | |||||
Find proteins for P0A800 (Escherichia coli (strain K12)) Explore P0A800  Go to UniProtKB:  P0A800 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A800 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Transcription termination/antitermination protein NusA | Q [auth AG] | 495 | Escherichia coli | Mutation(s): 0  Gene Names: nusA | ![]() |
UniProt | |||||
Find proteins for P0AFF8 (Escherichia coli O157:H7) Explore P0AFF8  Go to UniProtKB:  P0AFF8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AFF8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S18 | S [auth C] | 75 | Escherichia coli | Mutation(s): 0  Gene Names: rpsR | ![]() |
UniProt | |||||
Find proteins for A0A0E2KXL3 (Escherichia coli (strain UMEA 3162-1)) Explore A0A0E2KXL3  Go to UniProtKB:  A0A0E2KXL3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0E2KXL3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S20 | U [auth E] | 87 | Escherichia coli | Mutation(s): 0  Gene Names: rpsT | ![]() |
UniProt | |||||
Find proteins for C3TRH7 (Escherichia coli) Explore C3TRH7  Go to UniProtKB:  C3TRH7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3TRH7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 20 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S21 | V [auth F] | 71 | Escherichia coli | Mutation(s): 0  Gene Names: rpsU | ![]() |
UniProt | |||||
Find proteins for A0A0E2L2J1 (Escherichia coli (strain UMEA 3162-1)) Explore A0A0E2L2J1  Go to UniProtKB:  A0A0E2L2J1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0E2L2J1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 21 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S2 | W [auth G] | 241 | Escherichia coli | Mutation(s): 0  Gene Names: rpsB | ![]() |
UniProt | |||||
Find proteins for C3TPN2 (Escherichia coli) Explore C3TPN2  Go to UniProtKB:  C3TPN2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3TPN2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 22 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein bS1 | X [auth H] | 557 | Escherichia coli | Mutation(s): 0  Gene Names: rpsA, Z1257, ECs0994 | ![]() |
UniProt | |||||
Find proteins for P0AG69 (Escherichia coli O157:H7) Explore P0AG69  Go to UniProtKB:  P0AG69 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AG69 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 23 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S3 | Y [auth I] | 233 | Escherichia coli | Mutation(s): 0  Gene Names: rpsC | ![]() |
UniProt | |||||
Find proteins for B7MCS9 (Escherichia coli O45:K1 (strain S88 / ExPEC)) Explore B7MCS9  Go to UniProtKB:  B7MCS9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B7MCS9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 24 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S4 | Z [auth J] | 206 | Escherichia coli | Mutation(s): 0  Gene Names: rpsD, ramA, b3296, JW3258 | ![]() |
UniProt | |||||
Find proteins for P0A7V8 (Escherichia coli (strain K12)) Explore P0A7V8  Go to UniProtKB:  P0A7V8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7V8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 25 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S5 | AA [auth K] | 167 | Escherichia coli | Mutation(s): 0  Gene Names: rpsE, spc, b3303, JW3265 | ![]() |
UniProt | |||||
Find proteins for P0A7W1 (Escherichia coli (strain K12)) Explore P0A7W1  Go to UniProtKB:  P0A7W1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7W1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 26 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S6 | BA [auth L] | 104 | Escherichia coli | Mutation(s): 0  Gene Names: rpsF, NCTC8179_00894 | ![]() |
UniProt | |||||
Find proteins for A0A376ZL25 (Escherichia coli) Explore A0A376ZL25  Go to UniProtKB:  A0A376ZL25 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A376ZL25 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 27 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S7 | CA [auth M] | 179 | Escherichia coli | Mutation(s): 0  Gene Names: rpsG, b3341, JW3303 | ![]() |
UniProt | |||||
Find proteins for P02359 (Escherichia coli (strain K12)) Explore P02359  Go to UniProtKB:  P02359 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02359 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 28 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S8 | DA [auth N] | 130 | Escherichia coli | Mutation(s): 0  Gene Names:  rpsH, A5U30_004540, A8502_004035, A9X72_02245, ACN81_25460, ACU57_21020, AM464_09160, AW118_24840, AWP47_12705, B6R15_004081... | ![]() |
UniProt | |||||
Find proteins for C3SR12 (Escherichia coli) Explore C3SR12  Go to UniProtKB:  C3SR12 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SR12 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 29 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S9 | EA [auth O] | 130 | Escherichia coli | Mutation(s): 0  Gene Names:  rpsI, A5U30_002029, A6592_14035, A8499_002400, A8502_003025, A9X72_02640, AC065_15530, ACN81_18270, ACU57_14275, AM464_08780... | ![]() |
UniProt | |||||
Find proteins for C3SRY2 (Escherichia coli) Explore C3SRY2  Go to UniProtKB:  C3SRY2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SRY2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 30 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS10 | FA [auth P] | 99 | Escherichia coli | Mutation(s): 0  Gene Names: rpsJ | ![]() |
UniProt | |||||
Find proteins for P0A7R5 (Escherichia coli (strain K12)) Explore P0A7R5  Go to UniProtKB:  P0A7R5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7R5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 31 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S11 | GA [auth Q] | 117 | Escherichia coli | Mutation(s): 0  Gene Names: rpsK, b3297, JW3259 | ![]() |
UniProt | |||||
Find proteins for P0A7R9 (Escherichia coli (strain K12)) Explore P0A7R9  Go to UniProtKB:  P0A7R9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7R9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 32 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S12 | HA [auth R] | 124 | Escherichia coli | Mutation(s): 0  Gene Names: rpsL, strA, b3342, JW3304 | ![]() |
UniProt | |||||
Find proteins for P0A7S3 (Escherichia coli (strain K12)) Explore P0A7S3  Go to UniProtKB:  P0A7S3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7S3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 33 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S14 | IA [auth S] | 101 | Escherichia coli | Mutation(s): 0  Gene Names: rpsN, NCTC9073_00385 | ![]() |
UniProt | |||||
Find proteins for A0A2X1PQW4 (Escherichia coli) Explore A0A2X1PQW4  Go to UniProtKB:  A0A2X1PQW4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2X1PQW4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 34 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S15 | JA [auth T] | 89 | Escherichia coli | Mutation(s): 0  Gene Names: rpsO | ![]() |
UniProt | |||||
Find proteins for C3SSQ7 (Escherichia coli) Explore C3SSQ7  Go to UniProtKB:  C3SSQ7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SSQ7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 35 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S16 | KA [auth U] | 82 | Escherichia coli | Mutation(s): 0  Gene Names: rpsP | ![]() |
UniProt | |||||
Find proteins for C3SYP2 (Escherichia coli) Explore C3SYP2  Go to UniProtKB:  C3SYP2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SYP2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 36 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S17 | LA [auth V] | 84 | Escherichia coli | Mutation(s): 0  Gene Names:  rpsQ, A5U30_004545, A6592_25760, A8499_003325, A8502_004030, A9X72_02220, AC065_15970, ACN81_25485, ACU57_20995, AM464_09185... | ![]() |
UniProt | |||||
Find proteins for C3SQY7 (Escherichia coli) Explore C3SQY7  Go to UniProtKB:  C3SQY7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SQY7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 37 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S19 | MA [auth W] | 92 | Escherichia coli | Mutation(s): 0  Gene Names:  rpsS, rpsS_1, A5U30_004550, A8502_004025, A9X72_02195, ACN81_25510, ACU57_20970, AM464_09210, AW118_24890, AWP47_12655... | ![]() |
UniProt | |||||
Find proteins for C3SQW2 (Escherichia coli) Explore C3SQW2  Go to UniProtKB:  C3SQW2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SQW2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 38 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
30S ribosomal protein S13 | NA [auth X] | 118 | Escherichia coli | Mutation(s): 0  Gene Names: rpsM, G711_03878 | ![]() |
UniProt | |||||
Find proteins for A0A7U9IV78 (Escherichia coli HVH 36) Explore A0A7U9IV78  Go to UniProtKB:  A0A7U9IV78 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A7U9IV78 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 39 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L11 | OA [auth Y] | 142 | Escherichia coli | Mutation(s): 0  Gene Names: rplK, relC, b3983, JW3946 | ![]() |
UniProt | |||||
Find proteins for P0A7J7 (Escherichia coli (strain K12)) Explore P0A7J7  Go to UniProtKB:  P0A7J7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7J7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 40 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L7/L12 | PA [auth Z] | 121 | Escherichia coli | Mutation(s): 0  Gene Names: rplL | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 42 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein bL27 | RA [auth b] | 85 | Escherichia coli | Mutation(s): 0  Gene Names: rpmA | ![]() |
UniProt | |||||
Find proteins for P0A7M0 (Escherichia coli O157:H7) Explore P0A7M0  Go to UniProtKB:  P0A7M0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7M0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 43 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L28 | SA [auth c] | 78 | Escherichia coli | Mutation(s): 0  Gene Names: rpmB, ECVG_03476 | ![]() |
UniProt | |||||
Find proteins for A0A1X3JA73 (Escherichia coli H386) Explore A0A1X3JA73  Go to UniProtKB:  A0A1X3JA73 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A1X3JA73 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 45 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL29 | UA [auth e] | 62 | Escherichia coli | Mutation(s): 0  Gene Names: rpmC | ![]() |
UniProt | |||||
Find proteins for P0A7M8 (Escherichia coli O157:H7) Explore P0A7M8  Go to UniProtKB:  P0A7M8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7M8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 46 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L30 | VA [auth f] | 59 | Escherichia coli | Mutation(s): 0  Gene Names:  rpmD, A5U30_004536, A6592_25715, A8499_003316, A8502_004039, A9X72_02265, AC065_15925, ACN81_25440, ACU57_21040, AM464_09140... | ![]() |
UniProt | |||||
Find proteins for C3SR32 (Escherichia coli) Explore C3SR32  Go to UniProtKB:  C3SR32 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SR32 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 47 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein bL31 | WA [auth g] | 70 | Escherichia coli | Mutation(s): 0  Gene Names: rpmE | ![]() |
UniProt | |||||
Find proteins for P0A7N0 (Escherichia coli O157:H7) Explore P0A7N0  Go to UniProtKB:  P0A7N0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7N0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 48 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L2 | XA [auth h] | 273 | Escherichia coli | Mutation(s): 0  Gene Names: rplB, b3317, JW3279 | ![]() |
UniProt | |||||
Find proteins for P60422 (Escherichia coli (strain K12)) Explore P60422  Go to UniProtKB:  P60422 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60422 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 49 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L32 | YA [auth i] | 57 | Escherichia coli | Mutation(s): 0  Gene Names:  rpmF, rpmF_1, A5U30_002830, A8502_000661, A9X72_15435, ACN81_09130, ACU57_04225, AM464_23480, AW118_12110, AWP47_13180... | ![]() |
UniProt | |||||
Find proteins for C3TE02 (Escherichia coli) Explore C3TE02  Go to UniProtKB:  C3TE02 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3TE02 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 50 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L3 | ZA [auth j] | 209 | Escherichia coli | Mutation(s): 0  Gene Names: rplC, b3320, JW3282 | ![]() |
UniProt | |||||
Find proteins for P60438 (Escherichia coli (strain K12)) Explore P60438  Go to UniProtKB:  P60438 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60438 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 51 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L33 | AB [auth k] | 55 | Escherichia coli | Mutation(s): 0  Gene Names:  rpmG, rpmG_1, A5U30_004136, A6592_21955, A8499_000792, A8502_002345, A9X72_00400, AC065_17670, ACN81_07125, ACU57_07205... | ![]() |
UniProt | |||||
Find proteins for C3SME7 (Escherichia coli) Explore C3SME7  Go to UniProtKB:  C3SME7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SME7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 52 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L4 | BB [auth l] | 201 | Escherichia coli | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for A1AGK6 (Escherichia coli O1:K1 / APEC) Explore A1AGK6  Go to UniProtKB:  A1AGK6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1AGK6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 53 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L34 | CB [auth m] | 46 | Escherichia coli | Mutation(s): 0  Gene Names: rpmH | ![]() |
UniProt | |||||
Find proteins for B7MGC4 (Escherichia coli O45:K1 (strain S88 / ExPEC)) Explore B7MGC4  Go to UniProtKB:  B7MGC4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B7MGC4 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 54 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L5 | DB [auth n] | 179 | Escherichia coli | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for A0A140N5A3 (Escherichia coli (strain B / BL21-DE3)) Explore A0A140N5A3  Go to UniProtKB:  A0A140N5A3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A140N5A3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 55 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein bL35 | EB [auth o] | 64 | Escherichia coli | Mutation(s): 0  Gene Names: rpmI | ![]() |
UniProt | |||||
Find proteins for P0A7Q2 (Escherichia coli O157:H7) Explore P0A7Q2  Go to UniProtKB:  P0A7Q2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7Q2 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 56 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L6 | FB [auth p] | 177 | Escherichia coli | Mutation(s): 0  Gene Names:  rplF, A5U30_004539, A8499_003319, A8502_004036, A9X72_02250, AAG43_004459, AAS29_002175, ACN68_01830, ACN81_25455, ACU57_21025... | ![]() |
UniProt | |||||
Find proteins for C3SR17 (Escherichia coli) Explore C3SR17  Go to UniProtKB:  C3SR17 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SR17 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 57 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L36 | GB [auth q] | 38 | Escherichia coli | Mutation(s): 0  Gene Names: rpmJ | ![]() |
UniProt | |||||
Find proteins for A0A0E2L017 (Escherichia coli (strain UMEA 3162-1)) Explore A0A0E2L017  Go to UniProtKB:  A0A0E2L017 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0E2L017 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 58 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L9 | HB [auth r] | 149 | Escherichia coli | Mutation(s): 0  Gene Names:  rplI, rplI_3, A5U30_004313, A6592_17560, A8499_001609, A8502_001475, A9X72_22650, AC065_21185, ACN81_01395, ACU57_18985... | ![]() |
UniProt | |||||
Find proteins for C3SFP2 (Escherichia coli) Explore C3SFP2  Go to UniProtKB:  C3SFP2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SFP2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 59 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL13 | IB [auth s] | 142 | Escherichia coli | Mutation(s): 0  Gene Names: rplM | ![]() |
UniProt | |||||
Find proteins for P0AA12 (Escherichia coli O157:H7) Explore P0AA12  Go to UniProtKB:  P0AA12 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AA12 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 60 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L14 | JB [auth t] | 123 | Escherichia coli | Mutation(s): 0  Gene Names: rplN, A13A_03633 | ![]() |
UniProt | |||||
Find proteins for S1NW45 (Escherichia coli KTE182) Explore S1NW45  Go to UniProtKB:  S1NW45 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | S1NW45 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 61 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L15 | KB [auth u] | 144 | Escherichia coli | Mutation(s): 0  Gene Names: rplO | ![]() |
UniProt | |||||
Find proteins for A0A037Y8L6 (Escherichia coli) Explore A0A037Y8L6  Go to UniProtKB:  A0A037Y8L6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A037Y8L6 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 62 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L16 | LB [auth v] | 136 | Escherichia coli | Mutation(s): 0  Gene Names: rplP, b3313, JW3275 | ![]() |
UniProt | |||||
Find proteins for P0ADY7 (Escherichia coli (strain K12)) Explore P0ADY7  Go to UniProtKB:  P0ADY7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0ADY7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 63 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L17 | MB [auth w] | 127 | Escherichia coli | Mutation(s): 0  Gene Names:  rplQ, A5U30_004528, A6592_25675, A8499_003308, A8502_004047, A9X72_02305, ACN81_25400, ACU57_21080, AM464_09100, APX88_16195... | ![]() |
UniProt | |||||
Find proteins for C3SR72 (Escherichia coli) Explore C3SR72  Go to UniProtKB:  C3SR72 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SR72 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 64 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L18 | NB [auth x] | 117 | Escherichia coli | Mutation(s): 0  Gene Names: rplR | ![]() |
UniProt | |||||
Find proteins for A0A828U007 (Escherichia coli DEC2D) Explore A0A828U007  Go to UniProtKB:  A0A828U007 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A828U007 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 65 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein bL19 | OB [auth y] | 115 | Escherichia coli | Mutation(s): 0  Gene Names: rplS | ![]() |
UniProt | |||||
Find proteins for P0A7K8 (Escherichia coli O157:H7) Explore P0A7K8  Go to UniProtKB:  P0A7K8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7K8 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 66 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L20 | PB [auth z] | 118 | Escherichia coli | Mutation(s): 0  Gene Names: rplT | ![]() |
UniProt | |||||
Find proteins for B7MAS6 (Escherichia coli O45:K1 (strain S88 / ExPEC)) Explore B7MAS6  Go to UniProtKB:  B7MAS6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B7MAS6 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 6 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
NT DNA ops | F [auth 5] | 38 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
T DNA | G [auth 6] | 38 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
|
Entity ID: 8 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
mRNA with 30 nt long spacer | H [auth 7] | 47 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
|
Entity ID: 10 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
E-site and P-site fMet-tRNA | J [auth A], R [auth B] | 76 | Escherichia coli | ![]() | |
Sequence AnnotationsExpand | |||||
|
Entity ID: 18 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
16S rRNA | T [auth D] | 1,542 | Escherichia coli | ![]() | |
Sequence AnnotationsExpand | |||||
|
Entity ID: 41 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
23S rRNA | QA [auth a] | 2,904 | Escherichia coli | ![]() | |
Sequence AnnotationsExpand | |||||
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Entity ID: 44 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
5S rRNA | TA [auth d] | 120 | Escherichia coli | ![]() | |
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | RB [auth AE], SB [auth AE] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | QB [auth AE] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | -- |