8ULA | pdb_00008ula

Lmo2839 ABC transporter substrate binding protein

PDB DOI: https://doi.org/10.2210/pdb8ULA/pdb

Classification: SUGAR BINDING PROTEIN
Organism(s): Listeria monocytogenes
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2023-10-16 Released: 2025-05-14
Deposition Author(s): Ripley, B.M., Radoshevich, L.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.229 (Depositor), 0.229 (DCC)
R-Value Work:
0.188 (Depositor), 0.187 (DCC)
R-Value Observed:
0.189 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Structure of Listeria ABC transport substrate binding protein

Ripley, B.M., Radoshevich, L.

To be published.

Macromolecule Content

Total Structure Weight: 46.81 kDa
Atom Count: 3,282
Modeled Residue Count: 399
Deposited Residue Count: 426
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Extracellular solute-binding protein	A	426	Listeria monocytogenes	Mutation(s): 0 Gene Names: AF817_11545, ARL18_04440, B5G90_11060, D4V33_03830, D5299_03735, D5W00_06110, DG57_01345, DOV25_04275, GCV64_11235, GT011_11725... AF817_11545, ARL18_04440, B5G90_11060, D4V33_03830, D5299_03735, D5W00_06110, DG57_01345, DOV25_04275, GCV64_11235, GT011_11725, GYO01_09805, GYU24_11900
UniProt
Find proteins for A0A468ZWJ6 (Listeria monocytogenes) Explore A0A468ZWJ6 Go to UniProtKB: A0A468ZWJ6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A468ZWJ6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.229 (Depositor), 0.229 (DCC)
R-Value Work: 0.188 (Depositor), 0.187 (DCC)
R-Value Observed: 0.189 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 95.881	α = 90
b = 95.881	β = 90
c = 78.702	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
REFMAC	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-05-14

Deposition Author(s):

Radoshevich, L.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	T32 AI007343

Revision History (Full details and data files)

Version 1.0: 2025-05-14
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.