8U3N | pdb_00008u3n

Structure of P450Blt from Micromonospora sp. MW-13

PDB DOI: https://doi.org/10.2210/pdb8U3N/pdb

Classification: OXIDOREDUCTASE
Organism(s): Micromonospora sp. MW-13
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-09-08 Released: 2024-01-10
Deposition Author(s): Hansen, M.H., Cryle, M.J., Zhao, Y.
Funding Organization(s): Australian Research Council (ARC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.236 (Depositor), 0.235 (DCC)
R-Value Work:
0.194 (Depositor), 0.194 (DCC)
R-Value Observed:
0.195 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Structural Insights into a Side Chain Cross-Linking Biarylitide P450 from RiPP Biosynthesis

Hansen, M.H., Keto, A., Treisman, M., Sasi, V.M., Coe, L., Zhao, Y., Padva, L., Hess, C., Leichthammer, V., Machell, D.L., Schittenhelm, R.B., Jackson, C.J., Tailhades, J., Crusemann, M., De Voss, J.J., Krenske, E.H., Cryle, M.J.

(2024) ACS Catal : 812-826

DOI: https://doi.org/10.1021/acscatal.3c05417

Macromolecule Content

Total Structure Weight: 138.45 kDa
Atom Count: 9,221
Modeled Residue Count: 1,137
Deposited Residue Count: 1,260
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome P450-SU1	A, B, C	420	Micromonospora sp. MW-13	Mutation(s): 0 Gene Names: C5N14_21030 EC: 1.14
UniProt
Find proteins for A0ACD6BAH8 (Micromonospora sp. MW-13) Explore A0ACD6BAH8 Go to UniProtKB: A0ACD6BAH8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6BAH8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
HEM Query on HEM Download:Ideal Coordinates CCD File SDF format, chain L [auth C] SDF format, chain G [auth B] SDF format, chain D [auth A] MOL2 format, chain L [auth C] MOL2 format, chain G [auth B] MOL2 format, chain D [auth A] mmCIF format, chain L [auth C] mmCIF format, chain G [auth B] mmCIF format, chain D [auth A]	D [auth A], G [auth B], L [auth C]	PROTOPORPHYRIN IX CONTAINING FE C₃₄ H₃₂ Fe N₄ O₄ KABFMIBPWCXCRK-RGGAHWMASA-L		Interactions Focus chain D [auth A] Focus chain G [auth B] Focus chain L [auth C] Interactions & Density Focus chain D [auth A] Focus chain G [auth B] Focus chain L [auth C]
BGC Query on BGC Download:Ideal Coordinates CCD File SDF format, chain M [auth C] SDF format, chain J [auth B] SDF format, chain E [auth A] MOL2 format, chain M [auth C] MOL2 format, chain J [auth B] MOL2 format, chain E [auth A] mmCIF format, chain M [auth C] mmCIF format, chain J [auth B] mmCIF format, chain E [auth A]	E [auth A], J [auth B], M [auth C]	beta-D-glucopyranose C₆ H₁₂ O₆ WQZGKKKJIJFFOK-VFUOTHLCSA-N		Interactions Focus chain E [auth A] Focus chain J [auth B] Focus chain M [auth C] Interactions & Density Focus chain E [auth A] Focus chain J [auth B] Focus chain M [auth C]
SCN Query on SCN Download:Ideal Coordinates CCD File SDF format, chain I [auth B] SDF format, chain H [auth B] MOL2 format, chain I [auth B] MOL2 format, chain H [auth B] mmCIF format, chain I [auth B] mmCIF format, chain H [auth B]	H [auth B], I [auth B]	THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M		Interactions Focus chain H [auth B] Focus chain I [auth B] Interactions & Density Focus chain H [auth B] Focus chain I [auth B]
K Query on K Download:Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain K [auth B] SDF format, chain N [auth C] MOL2 format, chain F [auth A] MOL2 format, chain K [auth B] MOL2 format, chain N [auth C] mmCIF format, chain F [auth A] mmCIF format, chain K [auth B] mmCIF format, chain N [auth C]	F [auth A], K [auth B], N [auth C]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain K [auth B] Focus chain N [auth C] Interactions & Density Focus chain F [auth A] Focus chain K [auth B] Focus chain N [auth C]