Download MendeleyCrystal Structure of Glycine--tRNA ligase active site chimera from Mycobacterium thermoresistibile/tuberculosis (G5A bound)
Seibold, S., Lovell, S., Battaile, K.P., DeRocher, A.To be published.
8U2Q
Crystal Structure of Glycine--tRNA ligase active site chimera from Mycobacterium thermoresistibile/tuberculosis (G5A bound)
- PDB DOI: https://doi.org/10.2210/pdb8U2Q/pdb
- Classification: TRANSFERASE
- Organism(s): Mycolicibacterium thermoresistibile ATCC 19527
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2023-09-06 Released: 2023-09-13
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Institutes of Health/Office of the Director
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.45 Å
- R-Value Free: 0.209
- R-Value Work: 0.185
- R-Value Observed: 0.186
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glycine--tRNA ligase | 479 | Mycolicibacterium thermoresistibile ATCC 19527 | Mutation(s): 3 Gene Names: glyQS EC: 6.1.1.14 |  | |
UniProt | |||||
Find proteins for G7CIG9 (Mycolicibacterium thermoresistibile (strain ATCC 19527 / DSM 44167 / CIP 105390 / JCM 6362 / NCTC 10409 / 316)) Explore G7CIG9 Go to UniProtKB: G7CIG9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G7CIG9 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| G5A (Subject of Investigation/LOI) Query on G5A | F [auth A], J [auth B] | 5'-O-(glycylsulfamoyl)adenosine C12 H17 N7 O7 S AMWPZASLDLLQFT-JJNLEZRASA-N |  | ||
| ZN Query on ZN | H [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | E [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | D [auth A], I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | C [auth A], G [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.45 Å
- R-Value Free: 0.209
- R-Value Work: 0.185
- R-Value Observed: 0.186
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/m38u2q
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 171.286 | α = 90 |
| b = 87.388 | β = 104.12 |
| c = 99.152 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-09-13 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | 75N93022C00036 |
| National Institutes of Health/Office of the Director | United States | S10OD030394 |
Revision History (Full details and data files)
- Version 1.0: 2023-09-13
Type: Initial release
