8U2M

Structure of P450Blt from Micromonospora sp. MW-13 in Complex with Biarylitide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.200 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Structural Insights into a Side Chain Cross-Linking Biarylitide P450 from RiPP Biosynthesis

Hansen, M.H.Keto, A.Treisman, M.Sasi, V.M.Coe, L.Zhao, Y.Padva, L.Hess, C.Leichthammer, V.Machell, D.L.Schittenhelm, R.B.Jackson, C.J.Tailhades, J.Crusemann, M.De Voss, J.J.Krenske, E.H.Cryle, M.J.

(2024) ACS Catal : 812-826


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome P450-SU1
A, B, C
420Micromonospora sp. MW-13Mutation(s): 0 
Gene Names: C5N14_21030
EC: 1.14
UniProt
Find proteins for A0A3E2YLT4 (Micromonospora sp. MW-13)
Explore A0A3E2YLT4 
Go to UniProtKB:  A0A3E2YLT4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A3E2YLT4
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
MET-ARG-TYR-LEU-HIS5synthetic constructMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 7 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
HEM
Query on HEM

Download Ideal Coordinates CCD File 
J [auth A],
Q [auth B],
V [auth C]
PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
PG4
Query on PG4

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G [auth A]TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
TOE
Query on TOE

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O [auth B]2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
C7 H16 O4
JLGLQAWTXXGVEM-UHFFFAOYSA-N
MRY
Query on MRY

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P [auth B]MESO-ERYTHRITOL
C4 H10 O4
UNXHWFMMPAWVPI-ZXZARUISSA-N
TFA
Query on TFA

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S [auth B],
T [auth B],
W [auth C],
X [auth C]
trifluoroacetic acid
C2 H F3 O2
DTQVDTLACAAQTR-UHFFFAOYSA-N
ACT
Query on ACT

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E [auth A]
F [auth A]
H [auth A]
I [auth A]
N [auth B]
E [auth A],
F [auth A],
H [auth A],
I [auth A],
N [auth B],
R [auth B]
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
NA
Query on NA

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K [auth A],
L [auth A],
M [auth A],
U [auth B],
Y [auth C]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.200 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.674α = 90
b = 95.607β = 92.71
c = 105.763γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Australian Research Council (ARC)AustraliaDP190101272
Australian Research Council (ARC)AustraliaDP210101752

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-10
    Type: Initial release