8U1H

Axle-less Bacillus sp. PS3 F1 ATPase mutant

PDB DOI: https://doi.org/10.2210/pdb8U1H/pdb
EM Map EMD-41811: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Bacillus sp. PS3
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2023-09-01 Released: 2024-09-11
Deposition Author(s): Furlong, E.J., Zeng, Y.C., Brown, S.H.J., Sobti, M., Stewart, A.G.
Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.00 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

The molecular structure of an axle-less F1 ATPase

Furlong, E.J., Zeng, Y.C., Brown, S.H.J., Sobti, M., Stewart, A.G.

To be published.

Macromolecule Content

Total Structure Weight: 357.42 kDa
Atom Count: 22,713
Modelled Residue Count: 2,926
Deposited Residue Count: 3,221
Unique protein chains: 3

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase subunit alpha	A, B, C	502	Bacillus sp. PS3	Mutation(s): 2 Gene Names: uncA
UniProt
Find proteins for A0A0M3VGF9 (Bacillus sp. (strain PS3)) Explore A0A0M3VGF9 Go to UniProtKB: A0A0M3VGF9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0M3VGF9
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase subunit beta	D, E, F	484	Bacillus sp. PS3	Mutation(s): 0 Gene Names: uncD
UniProt
Find proteins for A0A0M4U1P9 (Bacillus sp. (strain PS3)) Explore A0A0M4U1P9 Go to UniProtKB: A0A0M4U1P9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0M4U1P9
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase gamma chain	G	263	Bacillus sp. PS3	Mutation(s): 2 Gene Names: uncG
UniProt
Find proteins for A0A0M4TPJ7 (Bacillus sp. (strain PS3)) Explore A0A0M4TPJ7 Go to UniProtKB: A0A0M4TPJ7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0M4TPJ7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ANP Query on ANP Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain J [auth B] SDF format, chain K [auth C] SDF format, chain Q [auth F] MOL2 format, chain H [auth A] MOL2 format, chain J [auth B] MOL2 format, chain K [auth C] MOL2 format, chain Q [auth F]	H [auth A], J [auth B], K [auth C], Q [auth F]	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C₁₀ H₁₇ N₆ O₁₂ P₃ PVKSNHVPLWYQGJ-KQYNXXCUSA-N		Interactions Focus chain H [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain Q [auth F] Interactions & Density Focus chain H [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain Q [auth F]
ADP Query on ADP Download Ideal Coordinates CCD File SDF format, chain M [auth D] MOL2 format, chain M [auth D]	M [auth D]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain M [auth D] Interactions & Density Focus chain M [auth D]
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain O [auth D] SDF format, chain P [auth E] MOL2 format, chain O [auth D] MOL2 format, chain P [auth E]	O [auth D], P [auth E]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain O [auth D] Focus chain P [auth E] Interactions & Density Focus chain O [auth D] Focus chain P [auth E]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain L [auth C] SDF format, chain N [auth D] SDF format, chain R [auth F] MOL2 format, chain I [auth A] MOL2 format, chain L [auth C] MOL2 format, chain N [auth D] MOL2 format, chain R [auth F]	I [auth A], L [auth C], N [auth D], R [auth F]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain L [auth C] Focus chain N [auth D] Focus chain R [auth F] Interactions & Density Focus chain I [auth A] Focus chain L [auth C] Focus chain N [auth D] Focus chain R [auth F]