8U0A | pdb_00008u0a

Crystal structure of Lyssavirus rabies (Ni-CE strain) nucleoprotein in complex with phosphoprotein chaperone

PDB DOI: https://doi.org/10.2210/pdb8U0A/pdb

Classification: VIRAL PROTEIN
Organism(s): Rabies virus Nishigahara RCEH
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-08-28 Released: 2025-04-23
Deposition Author(s): Donnelly, C.M., Stewart, M., Forwood, J.K.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.217 (Depositor), 0.217 (DCC)
R-Value Work:
0.182 (Depositor), 0.182 (DCC)
R-Value Observed:
0.184 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The Replication Function of Rabies Virus P Protein Is Regulated by a Novel Phosphorylation Site in the N-Terminal N Protein-Binding Region

Tudhope, E., Donnelly, C.M., Sethi, A., David, C., Williamson, N., Stewart, M., Forwood, J.K., Gooley, P.R., Moseley, G.W.

(2025) Viruses 17

DOI: https://doi.org/10.3390/v17081075

Macromolecule Content

Total Structure Weight: 58.38 kDa
Atom Count: 3,645
Modeled Residue Count: 410
Deposited Residue Count: 517
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphoprotein, Nucleoprotein fusion	A	517	Rabies virus Nishigahara RCEH	Mutation(s): 0
UniProt
Find proteins for O55611 (Rabies virus (strain Nishigahara RCEH)) Explore O55611 Go to UniProtKB: O55611
Find proteins for Q9IPJ8 (Rabies virus (strain Nishigahara RCEH)) Explore Q9IPJ8 Go to UniProtKB: Q9IPJ8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	O55611Q9IPJ8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.217 (Depositor), 0.217 (DCC)
R-Value Work: 0.182 (Depositor), 0.182 (DCC)
R-Value Observed: 0.184 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.17	α = 90
b = 74.496	β = 90
c = 154.721	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing
Coot	model building

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-04-23

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-04-23
Type: Initial release
Version 1.1: 2025-08-20
Changes: Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.