Cryo-EM reveals that Ctf18-RFC collaborates with PolE to load the PCNA clamp onto a leading strand DNA
Yuan, Z., Georgescu, R., O'Donnell, M., Li, H.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chromosome transmission fidelity protein 18 | A [auth C] | 26 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: CTF18 | |
UniProt | |||||
Find proteins for P49956 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P49956  Go to UniProtKB:  P49956 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P49956 | ||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA polymerase epsilon catalytic subunit A | D [auth E] | 2,222 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: POL2, DUN2, YNL262W, N0825 EC: 2.7.7.7 (PDB Primary Data), 3.1.11 (PDB Primary Data) | |
UniProt | |||||
Find proteins for P21951 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P21951  Go to UniProtKB:  P21951 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P21951 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chromosome transmission fidelity protein 8 | E [auth D] | 132 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: CTF8 | |
UniProt | |||||
Find proteins for P38877 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38877  Go to UniProtKB:  P38877 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P38877 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Sister chromatid cohesion protein DCC1 | F [auth B] | 380 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: DCC1, YCL016C, YCL16C | |
UniProt | |||||
Find proteins for P25559 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25559  Go to UniProtKB:  P25559 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P25559 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Replication factor C subunit 4 | G [auth 4] | 319 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RFC4 | |
UniProt | |||||
Find proteins for P40339 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40339  Go to UniProtKB:  P40339 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P40339 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Replication factor C subunit 3 | H [auth 3] | 327 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RFC3 | |
UniProt | |||||
Find proteins for P38629 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38629  Go to UniProtKB:  P38629 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P38629 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Replication factor C subunit 2 | I [auth 2] | 340 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RFC2 | |
UniProt | |||||
Find proteins for P40348 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40348  Go to UniProtKB:  P40348 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P40348 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Replication factor C subunit 5 | J [auth 5] | 354 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RFC5 | |
UniProt | |||||
Find proteins for P38251 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38251  Go to UniProtKB:  P38251 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P38251 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chromosome transmission fidelity protein 18 | K [auth 1] | 741 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: CTF18, CHL12, YMR078C, YM9582.03C | |
UniProt | |||||
Find proteins for P49956 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P49956  Go to UniProtKB:  P49956 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P49956 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Proliferating cell nuclear antigen | L [auth X], M [auth Y], N [auth Z] | 258 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: POL30, YBR088C, YBR0811 | |
UniProt | |||||
Find proteins for P15873 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P15873  Go to UniProtKB:  P15873 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P15873 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
Primer DNA | B [auth P] | 9 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
Template DNA | C [auth T] | 15 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
AGS Query on AGS | P [auth 4], R [auth 3], T [auth 2] | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER C10 H16 N5 O12 P3 S NLTUCYMLOPLUHL-KQYNXXCUSA-N | |||
ADP Query on ADP | V [auth 5] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
SF4 Query on SF4 | O [auth E] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N | |||
MG Query on MG | Q [auth 4], S [auth 3], U [auth 2] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM131754 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM115809 |
Howard Hughes Medical Institute (HHMI) | United States | M.E.O. |