8TW8

Deposited: 2023-08-20 Released: 2024-09-04
Deposition Author(s): Yuan, Z., Georgescu, R., O'Donnell, M., Li, H.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Howard Hughes Medical Institute (HHMI)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Replication factor C subunit 4	A [auth 4]	319	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RFC4
UniProt
Find proteins for P40339 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40339 Go to UniProtKB: P40339
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P40339
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Replication factor C subunit 3	B [auth 3]	327	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RFC3
UniProt
Find proteins for P38629 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38629 Go to UniProtKB: P38629
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P38629
Sequence Annotations Expand
Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Replication factor C subunit 2	C [auth 2]	340	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RFC2
UniProt
Find proteins for P40348 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40348 Go to UniProtKB: P40348
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P40348
Sequence Annotations Expand
Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Replication factor C subunit 5	D [auth 5]	354	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RFC5, YBR087W, YBR0810
UniProt
Find proteins for P38251 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38251 Go to UniProtKB: P38251
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P38251
Sequence Annotations Expand
Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Chromosome transmission fidelity protein 18	E [auth 1]	258	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: CTF18
UniProt
Find proteins for P49956 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P49956 Go to UniProtKB: P49956
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P49956
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Proliferating cell nuclear antigen	F [auth A], G [auth B], H [auth C]	258	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: POL30, YBR088C, YBR0811
UniProt
Find proteins for P15873 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P15873 Go to UniProtKB: P15873
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P15873
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AGS Query on AGS Download Ideal Coordinates CCD File SDF format, chain I [auth 4] SDF format, chain K [auth 3] SDF format, chain M [auth 2] MOL2 format, chain I [auth 4] MOL2 format, chain K [auth 3] MOL2 format, chain M [auth 2]	I [auth 4], K [auth 3], M [auth 2]	PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER C₁₀ H₁₆ N₅ O₁₂ P₃ S NLTUCYMLOPLUHL-KQYNXXCUSA-N		Interactions Focus chain I [auth 4] Focus chain K [auth 3] Focus chain M [auth 2] Interactions & Density Focus chain I [auth 4] Focus chain K [auth 3] Focus chain M [auth 2]
ADP Query on ADP Download Ideal Coordinates CCD File SDF format, chain O [auth 5] MOL2 format, chain O [auth 5]	O [auth 5]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain O [auth 5] Interactions & Density Focus chain O [auth 5]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain J [auth 4] SDF format, chain L [auth 3] SDF format, chain N [auth 2] MOL2 format, chain J [auth 4] MOL2 format, chain L [auth 3] MOL2 format, chain N [auth 2]	J [auth 4], L [auth 3], N [auth 2]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain J [auth 4] Focus chain L [auth 3] Focus chain N [auth 2] Interactions & Density Focus chain J [auth 4] Focus chain L [auth 3] Focus chain N [auth 2]

Experimental Data & Validation

Entry History & Funding Information

Deposition Author(s):

Yuan, Z.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM131754
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM115809
Howard Hughes Medical Institute (HHMI)	United States	M.E.O.