8TV2

Structure of apo FabS1C_L1

PDB DOI: https://doi.org/10.2210/pdb8TV2/pdb

Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2023-08-17 Released: 2024-07-31
Deposition Author(s): Singer, A.U., Bruce, H.A., Blazer, L., Adams, J.J., Sicheri, F., Sidhu, S.S.
Funding Organization(s): Celgene Corporation, Bristol-Myers Squibb (BMS) Research

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free: 0.247
R-Value Work: 0.204
R-Value Observed: 0.207

Starting Models: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Synthetic Antibodies targeting EPHA2 Induce Diverse Signaling-Competent Clusters with Differential Activation

Adams, J.J., Bruce, H.A., Ploder, L., Garcia, J., Khutoreskaya, G., Jarvik, N., Costa, L.E., Gorelik, M., Pot, I., Sicheri, F., Blazer, L.L., Singer, A.U., Sidhu, S.S.

To be published.

Macromolecule Content

Total Structure Weight: 96.56 kDa
Atom Count: 6,551
Modelled Residue Count: 876
Deposited Residue Count: 896
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
S1C variant of Fab_L1 heavy chain	A [auth D], C [auth A]	237	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
S1C variant of Fab_L1 light chain	B [auth E], D [auth B]	211	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL (Subject of Investigation/LOI) Query on CL Download Ideal Coordinates CCD File SDF format, chain E [auth D] SDF format, chain F [auth D] SDF format, chain H [auth E] SDF format, chain I [auth E] SDF format, chain J [auth E] SDF format, chain K [auth A] SDF format, chain L [auth A] SDF format, chain M [auth B] MOL2 format, chain E [auth D] MOL2 format, chain F [auth D] MOL2 format, chain H [auth E] MOL2 format, chain I [auth E] MOL2 format, chain J [auth E] MOL2 format, chain K [auth A] MOL2 format, chain L [auth A] MOL2 format, chain M [auth B]	E [auth D] F [auth D] H [auth E] I [auth E] J [auth E] E [auth D], F [auth D], H [auth E], I [auth E], J [auth E], K [auth A], L [auth A], M [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain E [auth D] Focus chain F [auth D] Focus chain H [auth E] Focus chain I [auth E] Focus chain J [auth E] Focus chain K [auth A] Focus chain L [auth A] Focus chain M [auth B] Interactions & Density Focus chain E [auth D] Focus chain F [auth D] Focus chain H [auth E] Focus chain I [auth E] Focus chain J [auth E] Focus chain K [auth A] Focus chain L [auth A] Focus chain M [auth B]
NA (Subject of Investigation/LOI) Query on NA Download Ideal Coordinates CCD File SDF format, chain G [auth D] SDF format, chain N [auth B] MOL2 format, chain G [auth D] MOL2 format, chain N [auth B]	G [auth D], N [auth B]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain G [auth D] Focus chain N [auth B] Interactions & Density Focus chain G [auth D] Focus chain N [auth B]