8TTU

Structure of SNX27 FERM complexed with Fam21A repeat 19 (1261 - 1274)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.204 

Starting Models: in silico, experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis for coupling of the WASH subunit FAM21 with the endosomal SNX27-Retromer complex.

Guo, Q.Chen, K.E.Gimenez-Andres, M.Jellett, A.P.Gao, Y.Simonetti, B.Liu, M.Danson, C.M.Heesom, K.J.Cullen, P.J.Collins, B.M.

(2024) Proc Natl Acad Sci U S A 121: e2405041121-e2405041121

  • DOI: https://doi.org/10.1073/pnas.2405041121
  • Primary Citation of Related Structures:  
    8TTA, 8TTC, 8TTD, 8TTT, 8TTU, 8TTV

  • PubMed Abstract: 

    Endosomal membrane trafficking is mediated by specific protein coats and formation of actin-rich membrane domains. The Retromer complex coordinates with sorting nexin (SNX) cargo adaptors including SNX27, and the SNX27-Retromer assembly interacts with the Wiskott-Aldrich syndrome protein and SCAR homolog (WASH) complex which nucleates actin filaments establishing the endosomal recycling domain. Crystal structures, modeling, biochemical, and cellular validation reveal how the FAM21 subunit of WASH interacts with both Retromer and SNX27. FAM21 binds the FERM domain of SNX27 using acidic-Asp-Leu-Phe (aDLF) motifs similar to those found in the SNX1 and SNX2 subunits of the ESCPE-1 complex. Overlapping FAM21 repeats and a specific Pro-Leu containing motif bind three distinct sites on Retromer involving both the VPS35 and VPS29 subunits. Mutation of the major VPS35-binding site does not prevent cargo recycling; however, it partially reduces endosomal WASH association indicating that a network of redundant interactions promote endosomal activity of the WASH complex. These studies establish the molecular basis for how SNX27-Retromer is coupled to the WASH complex via overlapping and multiplexed motif-based interactions required for the dynamic assembly of endosomal membrane recycling domains.


  • Organizational Affiliation

    The University of Queensland, Institute for Molecular Bioscience, St Lucia, QLD 4072, Australia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sorting nexin-27261Homo sapiensMutation(s): 0 
Gene Names: SNX27
UniProt & NIH Common Fund Data Resources
Find proteins for Q96L92 (Homo sapiens)
Explore Q96L92 
Go to UniProtKB:  Q96L92
PHAROS:  Q96L92
GTEx:  ENSG00000143376 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96L92
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Fam21A repeat 19 peptide14Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q641Q2 (Homo sapiens)
Explore Q641Q2 
Go to UniProtKB:  Q641Q2
GTEx:  ENSG00000099290 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ641Q2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.204 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 37.544α = 90
b = 74.497β = 90
c = 102.529γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Health and Medical Research Council (NHMRC, Australia)AustraliaAPP1156493
National Health and Medical Research Council (NHMRC, Australia)AustraliaAPP1136021

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-21
    Type: Initial release