8TOE

Deposited: 2023-08-03 Released: 2024-07-03
Deposition Author(s): Darst, S.A., Saecker, R.M., Mueller, A.U.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

(2024) Nat Struct Mol Biol

Macromolecule Content

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase subunit alpha	A [auth G], B [auth H], G [auth M]	329	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpoA, pez, phs, sez, b3295, JW3257 EC: 2.7.7.6
UniProt
Find proteins for P0A7Z4 (Escherichia coli (strain K12)) Explore P0A7Z4 Go to UniProtKB: P0A7Z4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7Z4
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase subunit beta	C [auth I]	1,342	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpoB, groN, nitB, rif, ron, stl, stv, tabD, b3987, JW3950 EC: 2.7.7.6
UniProt
Find proteins for P0A8V2 (Escherichia coli (strain K12)) Explore P0A8V2 Go to UniProtKB: P0A8V2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A8V2
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase subunit beta'	D [auth J]	1,407	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpoC, tabB, b3988, JW3951 EC: 2.7.7.6
UniProt
Find proteins for P0A8T7 (Escherichia coli (strain K12)) Explore P0A8T7 Go to UniProtKB: P0A8T7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A8T7
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase subunit omega	E [auth K]	91	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpoZ, b3649, JW3624 EC: 2.7.7.6
UniProt
Find proteins for P0A800 (Escherichia coli (strain K12)) Explore P0A800 Go to UniProtKB: P0A800
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A800
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA polymerase sigma factor RpoD	F [auth L]	613	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpoD
UniProt
Find proteins for Q0P6L9 (Escherichia coli) Explore Q0P6L9 Go to UniProtKB: Q0P6L9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q0P6L9
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Reference Sequence

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Entity ID: 6
Molecule	Chains	Length	Organism	Image
Nontemplate strand of lamdba PR promoter DNA	H [auth O]	105	Escherichia phage Lambda
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Reference Sequence

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Entity ID: 7
Molecule	Chains	Length	Organism	Image
Template strand of lamdba PR promoter DNA	I [auth P]	105	Escherichia phage Lambda
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
1N7 Query on 1N7 Download Ideal Coordinates CCD File SDF format, chain J [auth I] SDF format, chain N [auth J] SDF format, chain O [auth L] MOL2 format, chain J [auth I] MOL2 format, chain N [auth J] MOL2 format, chain O [auth L]	J [auth I], N [auth J], O [auth L]	CHAPSO C₃₂ H₅₉ N₂ O₈ S GUQQBLRVXOUDTN-XOHPMCGNSA-O		Interactions Focus chain J [auth I] Focus chain N [auth J] Focus chain O [auth L] Interactions & Density Focus chain J [auth I] Focus chain N [auth J] Focus chain O [auth L]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain L [auth J] SDF format, chain M [auth J] MOL2 format, chain L [auth J] MOL2 format, chain M [auth J]	L [auth J], M [auth J]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain L [auth J] Focus chain M [auth J] Interactions & Density Focus chain L [auth J] Focus chain M [auth J]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain K [auth J] MOL2 format, chain K [auth J]	K [auth J]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain K [auth J] Interactions & Density Focus chain K [auth J]