8TO4

EGFR(T790M/V948R) in complex with the allosteric inhibitor FRF-06-057

PDB DOI: https://doi.org/10.2210/pdb8TO4/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): Yes

Deposited: 2023-08-02 Released: 2024-08-28
Deposition Author(s): Chitnis, S.P., Deng, M.Q., Pham, C.P., Heppner, D.E.
Funding Organization(s): National Institutes of Health/National Center for Advancing Translational Sciences (NIH/NCATS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.99 Å
R-Value Free: 0.231
R-Value Work: 0.171
R-Value Observed: 0.176

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

EGFR(T790M/V948R) in complex with the allosteric inhibitor FRF-06-057

Chitnis, S.P., Pham, C.D., Deng, M.Q., Heppner, D.E.

To be published.

Macromolecule Content

Total Structure Weight: 152.77 kDa
Atom Count: 9,471
Modelled Residue Count: 1,162
Deposited Residue Count: 1,312
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Epidermal growth factor receptor	A [auth D], B [auth A], C [auth B], D [auth C]	328	Homo sapiens	Mutation(s): 2 Gene Names: EGFR, ERBB, ERBB1, HER1 EC: 2.7.10.1
UniProt & NIH Common Fund Data Resources
Find proteins for P00533 (Homo sapiens) Explore P00533 Go to UniProtKB: P00533
PHAROS: P00533 GTEx: ENSG00000146648
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00533
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ANP Query on ANP Download Ideal Coordinates CCD File SDF format, chain F [auth D] SDF format, chain I [auth A] SDF format, chain K [auth B] SDF format, chain M [auth C] MOL2 format, chain F [auth D] MOL2 format, chain I [auth A] MOL2 format, chain K [auth B] MOL2 format, chain M [auth C] mmCIF format, chain F [auth D] mmCIF format, chain I [auth A] mmCIF format, chain K [auth B] mmCIF format, chain M [auth C]	F [auth D], I [auth A], K [auth B], M [auth C]	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C₁₀ H₁₇ N₆ O₁₂ P₃ PVKSNHVPLWYQGJ-KQYNXXCUSA-N		Interactions Focus chain F [auth D] Focus chain I [auth A] Focus chain K [auth B] Focus chain M [auth C] Interactions & Density Focus chain F [auth D] Focus chain I [auth A] Focus chain K [auth B] Focus chain M [auth C]
IXR (Subject of Investigation/LOI) Query on IXR Download Ideal Coordinates CCD File SDF format, chain G [auth D] SDF format, chain N [auth C] MOL2 format, chain G [auth D] MOL2 format, chain N [auth C] mmCIF format, chain G [auth D] mmCIF format, chain N [auth C]	G [auth D], N [auth C]	(2R)-2-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)-2-phenyl-N-(1,3-thiazol-2-yl)acetamide C₁₉ H₁₃ N₃ O₃ S KTWHIWPHOSEMPP-OAHLLOKOSA-N		Interactions Focus chain G [auth D] Focus chain N [auth C] Interactions & Density Focus chain G [auth D] Focus chain N [auth C]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain E [auth D] SDF format, chain H [auth A] SDF format, chain J [auth B] SDF format, chain L [auth C] MOL2 format, chain E [auth D] MOL2 format, chain H [auth A] MOL2 format, chain J [auth B] MOL2 format, chain L [auth C] mmCIF format, chain E [auth D] mmCIF format, chain H [auth A] mmCIF format, chain J [auth B] mmCIF format, chain L [auth C]	E [auth D], H [auth A], J [auth B], L [auth C]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain E [auth D] Focus chain H [auth A] Focus chain J [auth B] Focus chain L [auth C] Interactions & Density Focus chain E [auth D] Focus chain H [auth A] Focus chain J [auth B] Focus chain L [auth C]