8TO3

EGFR(T790M/V948R) in complex with LN5461

PDB DOI: https://doi.org/10.2210/pdb8TO3/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): Yes

Deposited: 2023-08-02 Released: 2024-08-28
Deposition Author(s): Chitnis, S.C., Pham, C.D., Heppner, D.E.
Funding Organization(s): National Institutes of Health/National Center for Advancing Translational Sciences (NIH/NCATS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.49 Å
R-Value Free: 0.269
R-Value Work: 0.229
R-Value Observed: 0.231

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

EGFR(T790M/V948R) in complex with LN5461

Chitnis, S.P., Pham, C.D., Heppner, D.E.

To be published.

Macromolecule Content

Total Structure Weight: 152.23 kDa
Atom Count: 9,648
Modelled Residue Count: 1,170
Deposited Residue Count: 1,312
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Epidermal growth factor receptor	A [auth D], B [auth A], C [auth B], D [auth C]	328	Homo sapiens	Mutation(s): 2 Gene Names: EGFR, ERBB, ERBB1, HER1 EC: 2.7.10.1
UniProt & NIH Common Fund Data Resources
Find proteins for P00533 (Homo sapiens) Explore P00533 Go to UniProtKB: P00533
PHAROS: P00533 GTEx: ENSG00000146648
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00533
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
IXC (Subject of Investigation/LOI) Query on IXC Download Ideal Coordinates CCD File SDF format, chain G [auth A] MOL2 format, chain G [auth A] mmCIF format, chain G [auth A]	G [auth A]	3-hydroxy-N-{(3P)-3-[(4P)-2-(methylsulfanyl)-5-{2-[4-(piperazin-1-yl)anilino]pyridin-4-yl}-1H-imidazol-4-yl]phenyl}-2-[(1-oxo-1,3-dihydro-2H-isoindol-2-yl)methyl]benzamide C₄₁ H₃₈ N₈ O₃ S DBLFPZMZQSDENE-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Interactions & Density Focus chain G [auth A]
ANP Query on ANP Download Ideal Coordinates CCD File SDF format, chain F [auth D] SDF format, chain I [auth B] SDF format, chain K [auth C] MOL2 format, chain F [auth D] MOL2 format, chain I [auth B] MOL2 format, chain K [auth C] mmCIF format, chain F [auth D] mmCIF format, chain I [auth B] mmCIF format, chain K [auth C]	F [auth D], I [auth B], K [auth C]	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C₁₀ H₁₇ N₆ O₁₂ P₃ PVKSNHVPLWYQGJ-KQYNXXCUSA-N		Interactions Focus chain F [auth D] Focus chain I [auth B] Focus chain K [auth C] Interactions & Density Focus chain F [auth D] Focus chain I [auth B] Focus chain K [auth C]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain J [auth C] SDF format, chain E [auth D] SDF format, chain H [auth B] MOL2 format, chain J [auth C] MOL2 format, chain E [auth D] MOL2 format, chain H [auth B] mmCIF format, chain J [auth C] mmCIF format, chain E [auth D] mmCIF format, chain H [auth B]	E [auth D], H [auth B], J [auth C]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain E [auth D] Focus chain H [auth B] Focus chain J [auth C] Interactions & Density Focus chain E [auth D] Focus chain H [auth B] Focus chain J [auth C]