Skip to main content

 8TL0 | pdb_00008tl0

Structure of activated SAVED-CHAT filament


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8TL0

This is version 1.1 of the entry. See complete history. 

Literature

Type III-B CRISPR-Cas cascade of proteolytic cleavages.

Steens, J.A., Bravo, J.P.K., Salazar, C.R.P., Yildiz, C., Amieiro, A.M., Kostlbacher, S., Prinsen, S.H.P., Andres, A.S., Patinios, C., Bardis, A., Barendregt, A., Scheltema, R.A., Ettema, T.J.G., van der Oost, J., Taylor, D.W., Staals, R.H.J.

(2024) Science 383: 512-519

  • DOI: https://doi.org/10.1126/science.adk0378
  • Primary Citation Related Structures: 
    8TL0

  • PubMed Abstract: 

    The generation of cyclic oligoadenylates and subsequent allosteric activation of proteins that carry sensory domains is a distinctive feature of type III CRISPR-Cas systems. In this work, we characterize a set of associated genes of a type III-B system from Haliangium ochraceum that contains two caspase-like proteases, SAVED-CHAT and PCaspase (prokaryotic caspase), co-opted from a cyclic oligonucleotide-based antiphage signaling system (CBASS). Cyclic tri-adenosine monophosphate (AMP)-induced oligomerization of SAVED-CHAT activates proteolytic activity of the CHAT domains, which specifically cleave and activate PCaspase. Subsequently, activated PCaspase cleaves a multitude of proteins, which results in a strong interference phenotype in vivo in Escherichia coli. Taken together, our findings reveal how a CRISPR-Cas-based detection of a target RNA triggers a cascade of caspase-associated proteolytic activities.


  • Organizational Affiliation: 
    • Laboratory of Microbiology, Wageningen University and Research, Wageningen, Netherlands.

Macromolecule Content 

  • Total Structure Weight: 387.25 kDa 
  • Atom Count: 23,119 
  • Modeled Residue Count: 2,941 
  • Deposited Residue Count: 3,493 
  • Unique protein chains: 1
  • Unique nucleic acid chains: 1

Macromolecules


Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
CHAT domain-containing protein
A, B, C, D, I
A, B, C, D, I, K, L
496Haliangium ochraceumMutation(s): 0 
Gene Names: Hoch_1319
UniProt
Find proteins for D0LTI2 (Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2))
Explore D0LTI2 
Go to UniProtKB:  D0LTI2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD0LTI2
Sequence Annotations
Expand
Reference Sequence
Find similar nucleic acids by:  Sequence
Entity ID: 2
MoleculeChains LengthOrganismImage
RNA (5'-R(*AP*AP*A)-3')
E, F, G, H, J
E, F, G, H, J, M, N
3synthetic construct
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Welch FoundationUnited StatesF-1938
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM138348

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-06
    Type: Initial release
  • Version 1.1: 2025-05-14
    Changes: Data collection, Structure summary