Download MendeleyStructure of fission yeast Duf89 protein bound to Co2+ and PO4
Jacewicz, A., Sanchez, A.M., Shuman, S.To be published.
8TKZ
Structure of fission yeast Duf89 protein bound to Co2+ and PO4
- PDB DOI: https://doi.org/10.2210/pdb8TKZ/pdb
- Classification: HYDROLASE
- Organism(s): Schizosaccharomyces pombe
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2023-07-26 Released: 2024-06-26
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Department of Energy (DOE, United States), National Institutes of Health/Office of the Director
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.06 Å
- R-Value Free: 0.227
- R-Value Work: 0.174
- R-Value Observed: 0.177
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Damage-control phosphatase SPCC1393.13 | A [auth B] | 443 | Schizosaccharomyces pombe | Mutation(s): 1 Gene Names: SPCC1393.13 |  |
UniProt | |||||
Find proteins for O94725 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore O94725 Go to UniProtKB: O94725 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O94725 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 7 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PGE Query on PGE | D [auth B] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | B, C [auth B], E [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| PO4 (Subject of Investigation/LOI) Query on PO4 | G [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| ZN Query on ZN | K [auth B], L [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CO (Subject of Investigation/LOI) Query on CO | F [auth B] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |  | ||
| CL Query on CL | I [auth B], J [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | H [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.06 Å
- R-Value Free: 0.227
- R-Value Work: 0.174
- R-Value Observed: 0.177
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 55.109 | α = 90 |
| b = 91.163 | β = 90 |
| c = 106.813 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-06-26 Deposition Author(s): Jacewicz, A., Sanchez, A.M., Shuman, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35-GM126945 |
| Department of Energy (DOE, United States) | United States | DE-SC0012704 |
| National Institutes of Health/Office of the Director | United States | S10OD030394 |
Revision History (Full details and data files)
- Version 1.0: 2024-06-26
Type: Initial release
