8TJE

Zophobas morio black wasting virus strain OR-molitor virion structure

• PDB DOI: https://doi.org/10.2210/pdb8TJE/pdb
• EM Map EMD-41301: EMDB EMDataResource
• NAKB: 8TJE

• Classification: VIRUS/DNA
• Organism(s): Tenebrio molitor
• Mutation(s): No 


• Deposited: 2023-07-20 Released: 2023-08-23 
• Deposition Author(s): Penzes, J.J., Kaelber, J.T.
• Funding Organization(s): Other government, Other private

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.40 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Sequencing-free discovery by cryo-EM of a pathogenic parvovirus causing mass mortality of farmed beetles

Penzes, J.J., Holm, M., Firlar, E., Kaelber, J.T.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 60-mer - A60 

Biological assembly 1 assigned by authors and generated by UCSF CHIMERA 1.14_b42094. (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 52.93 kDa 
• Atom Count: 3,720 
• Modelled Residue Count: 445 
• Deposited Residue Count: 445 
• Unique protein chains: 1
• Unique nucleic acid chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	A	429	Tenebrio molitor	Mutation(s): 0
UniProt
Find proteins for A0AA49KFS3 (Zophobas morio black wasting virus) Explore A0AA49KFS3  Go to UniProtKB:  A0AA49KFS3

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (5'-D(P*CP*G)-3')	B	2	Tenebrio molitor

Entity ID: 3
Molecule	Chains	Length	Organism	Image
DNA (5'-D(P*CP*AP*GP*GP*CP*CP*AP*AP*A)-3')	C	9	Tenebrio molitor

Entity ID: 4
Molecule	Chains	Length	Organism	Image
DNA (5'-D(P*TP*CP*GP*AP*A)-3')	D	5	Tenebrio molitor

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.40 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	4.0

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-08-23 
Deposition Author(s): Penzes, J.J., Kaelber, J.T.

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Funding Organization	Location	Grant Number
Other government	United States	--
Other private	United States	--

Revision History  

• Version 1.0: 2023-08-23
  Type: Initial release