8TBX

Crystal structure of human DDX1 helicase in complex with ADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.207 

Starting Model: in silico
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This is version 1.1 of the entry. See complete history


Literature

Crystal structure of human DDX1 helicase in complex with ADP

Zeng, H.Dong, A.Li, Y.Yen, H.Hejazi, Z.Seitova, A.Arrowsmith, C.H.Edwards, A.M.Halabelian, L.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent RNA helicase DDX1470Homo sapiensMutation(s): 0 
Gene Names: DDX1
EC: 3.6.4.13
UniProt & NIH Common Fund Data Resources
Find proteins for Q92499 (Homo sapiens)
Explore Q92499 
Go to UniProtKB:  Q92499
PHAROS:  Q92499
GTEx:  ENSG00000079785 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92499
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.207 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.708α = 90
b = 71.517β = 90
c = 138.496γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data scaling
PHASERphasing
HKL-3000data reduction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute on Aging (NIH/NIA)United StatesU54 AG065187

Revision History  (Full details and data files)

  • Version 1.0: 2023-07-26
    Type: Initial release
  • Version 1.1: 2023-08-16
    Changes: Author supporting evidence, Data collection