8TB7

Cryo-EM Structure of GPR61-


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

An inverse agonist of orphan receptor GPR61 acts by a G protein-competitive allosteric mechanism.

Lees, J.A.Dias, J.M.Rajamohan, F.Fortin, J.P.O'Connor, R.Kong, J.X.Hughes, E.A.G.Fisher, E.L.Tuttle, J.B.Lovett, G.Kormos, B.L.Unwalla, R.J.Zhang, L.Dechert Schmitt, A.M.Zhou, D.Moran, M.Stevens, K.A.Fennell, K.F.Varghese, A.E.Maxwell, A.Cote, E.E.Zhang, Y.Han, S.

(2023) Nat Commun 14: 5938-5938

  • DOI: https://doi.org/10.1038/s41467-023-41646-3
  • Primary Citation of Related Structures:  
    8TB0, 8TB7

  • PubMed Abstract: 

    GPR61 is an orphan GPCR related to biogenic amine receptors. Its association with phenotypes relating to appetite makes it of interest as a druggable target to treat disorders of metabolism and body weight, such as obesity and cachexia. To date, the lack of structural information or a known biological ligand or tool compound has hindered comprehensive efforts to study GPR61 structure and function. Here, we report a structural characterization of GPR61, in both its active-like complex with heterotrimeric G protein and in its inactive state. Moreover, we report the discovery of a potent and selective small-molecule inverse agonist against GPR61 and structural elucidation of its allosteric binding site and mode of action. These findings offer mechanistic insights into an orphan GPCR while providing both a structural framework and tool compound to support further studies of GPR61 function and modulation.


  • Organizational Affiliation

    Discovery Sciences, Medicine Design, Pfizer Inc., Groton, CT, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
G-protein coupled receptor 61,Soluble cytochrome b562A [auth R]543Homo sapiensEscherichia coliMutation(s): 0 
Gene Names: GPR61cybC
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P0ABE7 (Escherichia coli)
Explore P0ABE7 
Go to UniProtKB:  P0ABE7
Find proteins for Q9BZJ8 (Homo sapiens)
Explore Q9BZJ8 
Go to UniProtKB:  Q9BZJ8
GTEx:  ENSG00000156097 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP0ABE7Q9BZJ8
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Fab24 BAK5 heavy chainB [auth H]490Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Fab hinge-binding nanobodyC [auth N]122Lama glamaMutation(s): 0 
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Fab24 BAK5 light chainD [auth L]214Homo sapiensMutation(s): 0 
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZOB (Subject of Investigation/LOI)
Query on ZOB

Download Ideal Coordinates CCD File 
E [auth R]6-{[(3,5-difluoropyridin-4-yl)methyl]amino}-N-(4-ethoxy-6-methylpyrimidin-2-yl)-2-methoxy-N-(2-methoxyethyl)pyridine-3-sulfonamide
C22 H26 F2 N6 O5 S
APXQLSSVLHYGGM-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-10-04
    Type: Initial release