8TAF

Autographa californica multiple nucleopolyhedrovirus VP39


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

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This is version 1.1 of the entry. See complete history


Literature

Helical reconstruction of VP39 reveals principles for baculovirus nucleocapsid assembly.

Benning, F.M.C.Jenni, S.Garcia, C.Y.Nguyen, T.H.Zhang, X.Chao, L.H.

(2024) Nat Commun 15: 250-250

  • DOI: https://doi.org/10.1038/s41467-023-44596-y
  • Primary Citation of Related Structures:  
    8TAF

  • PubMed Abstract: 

    Baculoviruses are insect-infecting pathogens with wide applications as biological pesticides, in vitro protein production vehicles and gene therapy tools. Its cylindrical nucleocapsid, which encapsulates and protects the circular double-stranded viral DNA encoding proteins for viral replication and entry, is formed by the highly conserved major capsid protein VP39. The mechanism for VP39 assembly remains unknown. We use electron cryomicroscopy to determine a 3.2 Å helical reconstruction of an infectious nucleocapsid of Autographa californica multiple nucleopolyhedrovirus, revealing how dimers of VP39 assemble into a 14-stranded helical tube. We show that VP39 comprises a distinct protein fold conserved across baculoviruses, which includes a Zinc finger domain and a stabilizing intra-dimer sling. Analysis of sample polymorphism shows that VP39 assembles in several closely-related helical geometries. This VP39 reconstruction reveals general principles for baculoviral nucleocapsid assembly.


  • Organizational Affiliation

    Department of Molecular Biology, Massachusetts General Hospital, Boston, MA, 02114, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Major viral capsid protein310Autographa californica multiple nucleopolyhedrovirusMutation(s): 0 
Gene Names: Ac-vp39LO84_090
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM142553
Swiss National Science FoundationSwitzerlandP180777
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM130289

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-10
    Type: Initial release
  • Version 1.1: 2024-05-01
    Changes: Database references