8T9D

CryoEM structure of TR-TRAP

  • Classification: STRUCTURAL PROTEIN
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2023-06-23 Released: 2024-07-03 
  • Deposition Author(s): Zhao, H., Asturias, F.
  • Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.66 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

An IDR-dependent mechanism for nuclear receptor control of Mediator interaction with RNA polymerase II

Zhao, H., Li, J., Xiang, Y., Malik, S., Kalchschmidt, J., Asturias, F.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 11,581Homo sapiensMutation(s): 0 
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Find proteins for Q15648 (Homo sapiens)
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GTEx:  ENSG00000125686 
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UniProt GroupQ15648
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 4270Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000136146 
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UniProt GroupQ9NPJ6
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 6246Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000133997 
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UniProt GroupO75586
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 7233Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000155868 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 8268Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000159479 
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UniProt GroupQ96G25
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 9146Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000141026 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 10135Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000133398 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 11117Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000161920 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 141,454Homo sapiensMutation(s): 0 
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Find proteins for O60244 (Homo sapiens)
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GTEx:  ENSG00000180182 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 15788Homo sapiensMutation(s): 0 
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Find proteins for Q96RN5 (Homo sapiens)
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GTEx:  ENSG00000099917 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 16877Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000175221 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 17651Homo sapiensMutation(s): 0 
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Find proteins for Q9NVC6 (Homo sapiens)
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GTEx:  ENSG00000042429 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 18208Homo sapiensMutation(s): 0 
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Find proteins for Q9BUE0 (Homo sapiens)
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GTEx:  ENSG00000130772 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 20N [auth O]212Homo sapiensMutation(s): 0 
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Find proteins for Q9H944 (Homo sapiens)
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GTEx:  ENSG00000124641 
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UniProt GroupQ9H944
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 21O [auth P]144Homo sapiensMutation(s): 0 
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Find proteins for Q13503 (Homo sapiens)
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GTEx:  ENSG00000152944 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 22P [auth Q]200Homo sapiensMutation(s): 0 
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Find proteins for Q15528 (Homo sapiens)
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GTEx:  ENSG00000148297 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 23Q [auth R]1,368Homo sapiensMutation(s): 0 
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Find proteins for Q9ULK4 (Homo sapiens)
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PHAROS:  Q9ULK4
GTEx:  ENSG00000112282 
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UniProt GroupQ9ULK4
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 24R [auth S]989Homo sapiensMutation(s): 0 
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Find proteins for O75448 (Homo sapiens)
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GTEx:  ENSG00000008838 
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UniProt GroupO75448
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 25S [auth T]747Homo sapiensMutation(s): 0 
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Find proteins for Q71SY5 (Homo sapiens)
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GTEx:  ENSG00000104973 
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UniProt GroupQ71SY5
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 27T [auth V]311Homo sapiensMutation(s): 0 
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Find proteins for Q6P2C8 (Homo sapiens)
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GTEx:  ENSG00000160563 
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UniProt GroupQ6P2C8
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 28U [auth W]178Homo sapiensMutation(s): 0 
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Find proteins for Q9H204 (Homo sapiens)
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GTEx:  ENSG00000118579 
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UniProt GroupQ9H204
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 29V [auth X]200Homo sapiensMutation(s): 0 
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Find proteins for Q9NX70 (Homo sapiens)
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GTEx:  ENSG00000063322 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 30W [auth Y]178Homo sapiensMutation(s): 0 
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Find proteins for Q96HR3 (Homo sapiens)
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GTEx:  ENSG00000164758 
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UniProt GroupQ96HR3
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 31X [auth Z]131Homo sapiensMutation(s): 0 
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Find proteins for Q9Y3C7 (Homo sapiens)
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GTEx:  ENSG00000108590 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown PeptideY [auth a]20Homo sapiensMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 13Z [auth 9]2,174Homo sapiensMutation(s): 0 
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Find proteins for Q9UHV7 (Homo sapiens)
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GTEx:  ENSG00000108510 
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UniProt GroupQ9UHV7
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.66 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR01-67167

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-03
    Type: Initial release