8T1L

Atomic model of the mammalian mouse Mediator complex with CKM module

  • Classification: GENE REGULATION
  • Organism(s): Mus musculus
  • Mutation(s): No 

  • Deposited: 2023-06-02 Released: 2024-07-03 
  • Deposition Author(s): Zhao, H., Asturias, F.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers.

Zhao, H.Li, J.Xiang, Y.Malik, S.Young, N.Ryner, M.Conte, A.Roeder, R.Shi, Y.Casellas, R.Asturias, F.J.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 8A [auth E]268Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9D7W5 (Mus musculus)
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 1B [auth A]1,575Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
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IMPC:  MGI:1100846
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UniProt GroupQ925J9
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 4C [auth B]270Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CQA5 (Mus musculus)
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UniProt GroupQ9CQA5
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 6D [auth C]246Mus musculusMutation(s): 0 
UniProt
Find proteins for Q921D4 (Mus musculus)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 7E [auth D]233Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CZB6 (Mus musculus)
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UniProt GroupQ9CZB6
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 9142Mus musculusMutation(s): 0 
UniProt
Find proteins for Q8VCS6 (Mus musculus)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 10135Mus musculusMutation(s): 0 
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Find proteins for Q9CXU0 (Mus musculus)
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IMPC:  MGI:106331
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UniProt GroupQ9CXU0
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 11117Mus musculusMutation(s): 0 
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Find proteins for Q9D8C6 (Mus musculus)
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IMPC:  MGI:1913422
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UniProt GroupQ9D8C6
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 141,459Mus musculusMutation(s): 0 
UniProt
Find proteins for A2ABV5 (Mus musculus)
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 15789Mus musculusMutation(s): 0 
UniProt
Find proteins for Q924H2 (Mus musculus)
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 16828Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q6PGF3 (Mus musculus)
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IMPC:  MGI:2158394
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UniProt GroupQ6PGF3
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 17649Mus musculusMutation(s): 0 
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Find proteins for Q8VCD5 (Mus musculus)
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IMPC:  MGI:2182585
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UniProt GroupQ8VCD5
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 18208Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9CZ82 (Mus musculus)
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IMPC:  MGI:1914469
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UniProt GroupQ9CZ82
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 20N [auth O]212Mus musculusMutation(s): 0 
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Find proteins for Q9R0X0 (Mus musculus)
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IMPC:  MGI:1929648
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UniProt GroupQ9R0X0
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 21O [auth P]144Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CQ39 (Mus musculus)
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UniProt GroupQ9CQ39
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 22P [auth Q]200Mus musculusMutation(s): 0 
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Find proteins for Q62276 (Mus musculus)
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IMPC:  MGI:98446
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UniProt GroupQ62276
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 23Q [auth R]1,367Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q80YQ2 (Mus musculus)
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IMPC:  MGI:1917458
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UniProt GroupQ80YQ2
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 24R [auth S]987Mus musculusMutation(s): 0 
UniProt
Find proteins for Q99K74 (Mus musculus)
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UniProt GroupQ99K74
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 25S [auth T]745Mus musculusMutation(s): 0 
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Find proteins for Q8VCB2 (Mus musculus)
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IMPC:  MGI:1922863
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UniProt GroupQ8VCB2
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 27T [auth V]311Mus musculusMutation(s): 0 
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Find proteins for Q9DB40 (Mus musculus)
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IMPC:  MGI:1916225
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UniProt GroupQ9DB40
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 28U [auth W]178Mus musculusMutation(s): 0 
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Find proteins for Q920D3 (Mus musculus)
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IMPC:  MGI:1914249
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UniProt GroupQ920D3
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 29V [auth X]199Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9DB91 (Mus musculus)
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UniProt GroupQ9DB91
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 30W [auth Y]178Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CQI9 (Mus musculus)
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UniProt GroupQ9CQI9
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 31X [auth Z]131Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CXU1 (Mus musculus)
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UniProt GroupQ9CXU1
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
UnknownY [auth a]20Mus musculusMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 13Z [auth 9]2,171Mus musculusMutation(s): 0 
UniProt
Find proteins for Q5SWW4 (Mus musculus)
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UniProt GroupQ5SWW4
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIXdev_3758:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01-67167
National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-03
    Type: Initial release
  • Version 1.1: 2024-10-16
    Changes: Data collection, Structure summary