8T1L

Atomic model of the mammalian mouse Mediator complex with CKM module

  • Classification: GENE REGULATION
  • Organism(s): Mus musculus
  • Mutation(s): No 

  • Deposited: 2023-06-02 Released: 2024-07-03 
  • Deposition Author(s): Zhao, H., Asturias, F.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers.

Zhao, H., Li, J., Xiang, Y., Malik, S., Young, N., Ryner, M., Conte, A., Roeder, R., Shi, Y., Casellas, R., Asturias, F.J.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 8A [auth E]268Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9D7W5 (Mus musculus)
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 1B [auth A]1,575Mus musculusMutation(s): 0 
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IMPC:  MGI:1100846
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UniProt GroupQ925J9
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 4C [auth B]270Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CQA5 (Mus musculus)
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UniProt GroupQ9CQA5
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 6D [auth C]246Mus musculusMutation(s): 0 
UniProt
Find proteins for Q921D4 (Mus musculus)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 7E [auth D]233Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CZB6 (Mus musculus)
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UniProt GroupQ9CZB6
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 9142Mus musculusMutation(s): 0 
UniProt
Find proteins for Q8VCS6 (Mus musculus)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 10135Mus musculusMutation(s): 0 
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IMPC:  MGI:106331
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UniProt GroupQ9CXU0
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 11117Mus musculusMutation(s): 0 
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Find proteins for Q9D8C6 (Mus musculus)
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IMPC:  MGI:1913422
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UniProt GroupQ9D8C6
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 141,459Mus musculusMutation(s): 0 
UniProt
Find proteins for A2ABV5 (Mus musculus)
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UniProt GroupA2ABV5
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 15789Mus musculusMutation(s): 0 
UniProt
Find proteins for Q924H2 (Mus musculus)
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 16828Mus musculusMutation(s): 0 
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Find proteins for Q6PGF3 (Mus musculus)
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IMPC:  MGI:2158394
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UniProt GroupQ6PGF3
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 17649Mus musculusMutation(s): 0 
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Find proteins for Q8VCD5 (Mus musculus)
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IMPC:  MGI:2182585
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UniProt GroupQ8VCD5
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 18208Mus musculusMutation(s): 0 
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Find proteins for Q9CZ82 (Mus musculus)
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IMPC:  MGI:1914469
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UniProt GroupQ9CZ82
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 20N [auth O]212Mus musculusMutation(s): 0 
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Find proteins for Q9R0X0 (Mus musculus)
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IMPC:  MGI:1929648
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UniProt GroupQ9R0X0
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 21O [auth P]144Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CQ39 (Mus musculus)
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UniProt GroupQ9CQ39
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 22P [auth Q]200Mus musculusMutation(s): 0 
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Find proteins for Q62276 (Mus musculus)
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IMPC:  MGI:98446
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UniProt GroupQ62276
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 23Q [auth R]1,367Mus musculusMutation(s): 0 
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Find proteins for Q80YQ2 (Mus musculus)
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IMPC:  MGI:1917458
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UniProt GroupQ80YQ2
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 24R [auth S]987Mus musculusMutation(s): 0 
UniProt
Find proteins for Q99K74 (Mus musculus)
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UniProt GroupQ99K74
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 25S [auth T]745Mus musculusMutation(s): 0 
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Find proteins for Q8VCB2 (Mus musculus)
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IMPC:  MGI:1922863
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UniProt GroupQ8VCB2
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 27T [auth V]311Mus musculusMutation(s): 0 
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Find proteins for Q9DB40 (Mus musculus)
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IMPC:  MGI:1916225
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UniProt GroupQ9DB40
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 28U [auth W]178Mus musculusMutation(s): 0 
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Find proteins for Q920D3 (Mus musculus)
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IMPC:  MGI:1914249
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UniProt GroupQ920D3
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 29V [auth X]199Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9DB91 (Mus musculus)
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UniProt GroupQ9DB91
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 30W [auth Y]178Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CQI9 (Mus musculus)
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UniProt GroupQ9CQI9
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 31X [auth Z]131Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CXU1 (Mus musculus)
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UniProt GroupQ9CXU1
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
UnknownY [auth a]20Mus musculusMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 13Z [auth 9]2,171Mus musculusMutation(s): 0 
UniProt
Find proteins for Q5SWW4 (Mus musculus)
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UniProt GroupQ5SWW4
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIXdev_3758:

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01-67167
National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-03
    Type: Initial release