8T1I

Atomic model of the mammalian Mediator complex with MED26 subunit

  • Classification: GENE REGULATION
  • Organism(s): Mus musculus
  • Mutation(s): No 

  • Deposited: 2023-06-02 Released: 2024-06-12 
  • Deposition Author(s): Zhao, H., Asturias, F.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

An IDR-dependent mechanism for nuclear receptor control of Mediator interaction with RNA polymerase II

Zhao, H., Li, J., Xiang, Y., Malik, S., Young, N., Ryner, M., Conte, A., Roeder, R., Shi, Y., Casellas, R., Asturias, F.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 11,575Mus musculusMutation(s): 0 
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Find proteins for Q925J9 (Mus musculus)
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IMPC:  MGI:1100846
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UniProt GroupQ925J9
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 4270Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CQA5 (Mus musculus)
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UniProt GroupQ9CQA5
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 6246Mus musculusMutation(s): 0 
UniProt
Find proteins for Q921D4 (Mus musculus)
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UniProt GroupQ921D4
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 7233Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CZB6 (Mus musculus)
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UniProt GroupQ9CZB6
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 8268Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9D7W5 (Mus musculus)
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UniProt GroupQ9D7W5
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 9142Mus musculusMutation(s): 0 
UniProt
Find proteins for Q8VCS6 (Mus musculus)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 10135Mus musculusMutation(s): 0 
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Find proteins for Q9CXU0 (Mus musculus)
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IMPC:  MGI:106331
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UniProt GroupQ9CXU0
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 11117Mus musculusMutation(s): 0 
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Find proteins for Q9D8C6 (Mus musculus)
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IMPC:  MGI:1913422
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UniProt GroupQ9D8C6
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 141,459Mus musculusMutation(s): 0 
UniProt
Find proteins for A2ABV5 (Mus musculus)
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UniProt GroupA2ABV5
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 15789Mus musculusMutation(s): 0 
UniProt
Find proteins for Q924H2 (Mus musculus)
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UniProt GroupQ924H2
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 16828Mus musculusMutation(s): 0 
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Find proteins for Q6PGF3 (Mus musculus)
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IMPC:  MGI:2158394
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UniProt GroupQ6PGF3
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 17649Mus musculusMutation(s): 0 
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Find proteins for Q8VCD5 (Mus musculus)
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IMPC:  MGI:2182585
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UniProt GroupQ8VCD5
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 18208Mus musculusMutation(s): 0 
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Find proteins for Q9CZ82 (Mus musculus)
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IMPC:  MGI:1914469
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UniProt GroupQ9CZ82
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 19240Mus musculusMutation(s): 0 
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Find proteins for Q8C1S0 (Mus musculus)
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IMPC:  MGI:1914234
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UniProt GroupQ8C1S0
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 20212Mus musculusMutation(s): 0 
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Find proteins for Q9R0X0 (Mus musculus)
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IMPC:  MGI:1929648
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UniProt GroupQ9R0X0
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 21144Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CQ39 (Mus musculus)
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UniProt GroupQ9CQ39
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 22200Mus musculusMutation(s): 0 
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Find proteins for Q62276 (Mus musculus)
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IMPC:  MGI:98446
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UniProt GroupQ62276
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 231,367Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q80YQ2 (Mus musculus)
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IMPC:  MGI:1917458
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UniProt GroupQ80YQ2
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 24987Mus musculusMutation(s): 0 
UniProt
Find proteins for Q99K74 (Mus musculus)
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UniProt GroupQ99K74
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 25745Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8VCB2 (Mus musculus)
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IMPC:  MGI:1922863
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UniProt GroupQ8VCB2
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 26588Mus musculusMutation(s): 0 
UniProt
Find proteins for Q7TN02 (Mus musculus)
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UniProt GroupQ7TN02
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 27311Mus musculusMutation(s): 0 
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Find proteins for Q9DB40 (Mus musculus)
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IMPC:  MGI:1916225
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UniProt GroupQ9DB40
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 28178Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q920D3 (Mus musculus)
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IMPC:  MGI:1914249
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UniProt GroupQ920D3
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 29199Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9DB91 (Mus musculus)
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UniProt GroupQ9DB91
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 30178Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CQI9 (Mus musculus)
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UniProt GroupQ9CQI9
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 31131Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CXU1 (Mus musculus)
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UniProt GroupQ9CXU1
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown PeptideAA [auth a]20Mus musculusMutation(s): 0 
Sequence Annotations
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIXdev_3758:

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01-67167
National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-12
    Type: Initial release