S127A variant of LarB, a carboxylase/hydrolase involved in synthesis of the cofactor for lactate racemase, in complex with Zinc and soaked with bicarbonate.
Chatterjee, S., Rankin, J.A., Hu, J., Hausinger, R.P.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Pyridinium-3,5-biscarboxylic acid mononucleotide synthase | 256 | Lactiplantibacillus plantarum WCFS1 | Mutation(s): 1  Gene Names: larB, lp_0105 EC: 2.5.1.143 | ||
UniProt | |||||
Find proteins for F9UST0 (Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)) Explore F9UST0  Go to UniProtKB:  F9UST0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | F9UST0 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | G [auth A], I [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | H [auth A], J [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 120.38 | α = 90 |
b = 120.38 | β = 90 |
c = 213.159 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
iMOSFLM | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Science Foundation (NSF, United States) | United States | CHE-1807073 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM128959 |