8SQN

CryoEM structure of Western equine encephalitis virus VLP in complex with the chimeric Du-D1-Mo-D2 MXRA8 receptor


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.89 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Vertebrate-class-specific binding modes of the alphavirus receptor MXRA8.

Zimmerman, O.Zimmerman, M.I.Raju, S.Nelson, C.A.Errico, J.M.Madden, E.A.Holmes, A.C.Hassan, A.O.VanBlargan, L.A.Kim, A.S.Adams, L.J.Basore, K.Whitener, B.M.Palakurty, S.Davis-Adams, H.G.Sun, C.Gilliland Jr., T.Earnest, J.T.Ma, H.Ebel, G.D.Zmasek, C.Scheuermann, R.H.Klimstra, W.B.Fremont, D.H.Diamond, M.S.

(2023) Cell 186: 4818-4833.e25

  • DOI: https://doi.org/10.1016/j.cell.2023.09.007
  • Primary Citation of Related Structures:  
    8SQN

  • PubMed Abstract: 

    MXRA8 is a receptor for chikungunya (CHIKV) and other arthritogenic alphaviruses with mammalian hosts. However, mammalian MXRA8 does not bind to alphaviruses that infect humans and have avian reservoirs. Here, we show that avian, but not mammalian, MXRA8 can act as a receptor for Sindbis, western equine encephalitis (WEEV), and related alphaviruses with avian reservoirs. Structural analysis of duck MXRA8 complexed with WEEV reveals an inverted binding mode compared with mammalian MXRA8 bound to CHIKV. Whereas both domains of mammalian MXRA8 bind CHIKV E1 and E2, only domain 1 of avian MXRA8 engages WEEV E1, and no appreciable contacts are made with WEEV E2. Using these results, we generated a chimeric avian-mammalian MXRA8 decoy-receptor that neutralizes infection of multiple alphaviruses from distinct antigenic groups in vitro and in vivo. Thus, different alphaviruses can bind MXRA8 encoded by different vertebrate classes with distinct engagement modes, which enables development of broad-spectrum inhibitors.


  • Organizational Affiliation

    Department of Medicine, Washington University School of Medicine, Saint Louis, MO 63110, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DuD1MoD2 chimeric MXRA8265Anas platyrhynchosMutation(s): 0 
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for A0A8B9TXK0 (Anas platyrhynchos)
Explore A0A8B9TXK0 
Go to UniProtKB:  A0A8B9TXK0
Find proteins for Q9DBV4 (Mus musculus)
Explore Q9DBV4 
Go to UniProtKB:  Q9DBV4
IMPC:  MGI:1922011
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsA0A8B9TXK0Q9DBV4
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
E1 envelope glycoproteinB,
D [auth F],
F [auth J],
H [auth N]
438Western equine encephalitis virusMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P13897 (Western equine encephalitis virus)
Explore P13897 
Go to UniProtKB:  P13897
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP13897
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
E2 envelope glycoproteinC [auth D],
E [auth H],
G [auth L],
I [auth P]
415Western equine encephalitis virusMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P13897 (Western equine encephalitis virus)
Explore P13897 
Go to UniProtKB:  P13897
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP13897
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.89 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.01

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesHHSN272201700060C

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-20
    Type: Initial release