8SQL

Cleaved Ycf1p Monomer in the Beta Conformation

• PDB DOI: https://doi.org/10.2210/pdb8SQL/pdb
• EM Map EMD-40709: EMDB EMDataResource

• Classification: TRANSPORT PROTEIN
• Organism(s): Saccharomyces cerevisiae
• Expression System: Escherichia coli
• Mutation(s): No 
• Membrane Protein: Yes  PDBTM


• Deposited: 2023-05-04 Released: 2024-05-08 
• Deposition Author(s): Bickers, S.C., Benlekbir, S., Rubinstein, J.L., Kanelis, V.
• Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cleaved Ycf1p Monomer in the Beta Conformation

Bickers, S.C., Benlekbir, S., Rubinstein, J.L., Kanelis, V.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 176.62 kDa 
• Atom Count: 11,218 
• Modelled Residue Count: 1,409 
• Deposited Residue Count: 1,550 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Metal resistance protein YCF1	A	1,537	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: YCF1, YDR135C, YD9302.11C EC: 7.2.2.2 (PDB Primary Data), 7.6.2.3 (PDB Primary Data) Membrane Entity: Yes
UniProt
Find proteins for P39109 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P39109  Go to UniProtKB:  P39109

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Unknown peptide from Ycf1p R region	B	13	Saccharomyces cerevisiae	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PTY (Subject of Investigation/LOI)	C [auth A], D [auth A]	PHOSPHATIDYLETHANOLAMINE C40 H80 N O8 P NJGIRBISCGPRPF-KXQOOQHDSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-05-08 
Deposition Author(s): Bickers, S.C., Benlekbir, S., Rubinstein, J.L., Kanelis, V.

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Funding Organization	Location	Grant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)	Canada	RGPIN-2020-05835

Revision History  

• Version 1.0: 2024-05-08
  Type: Initial release