8SNY

Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) bound to the trailer complementary promoter


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.41 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structures of the promoter-bound respiratory syncytial virus polymerase.

Cao, D.Gao, Y.Chen, Z.Gooneratne, I.Roesler, C.Mera, C.D'Cunha, P.Antonova, A.Katta, D.Romanelli, S.Wang, Q.Rice, S.Lemons, W.Ramanathan, A.Liang, B.

(2024) Nature 625: 611-617

  • DOI: https://doi.org/10.1038/s41586-023-06867-y
  • Primary Citation of Related Structures:  
    8SNX, 8SNY

  • PubMed Abstract: 

    The respiratory syncytial virus (RSV) polymerase is a multifunctional RNA-dependent RNA polymerase composed of the large (L) protein and the phosphoprotein (P). It transcribes the RNA genome into ten viral mRNAs and replicates full-length viral genomic and antigenomic RNAs 1 . The RSV polymerase initiates RNA synthesis by binding to the conserved 3'-terminal RNA promoters of the genome or antigenome 2 . However, the lack of a structure of the RSV polymerase bound to the RNA promoter has impeded the mechanistic understanding of RSV RNA synthesis. Here we report cryogenic electron microscopy structures of the RSV polymerase bound to its genomic and antigenomic viral RNA promoters, representing two of the first structures of an RNA-dependent RNA polymerase in complex with its RNA promoters in non-segmented negative-sense RNA viruses. The overall structures of the promoter-bound RSV polymerases are similar to that of the unbound (apo) polymerase. Our structures illustrate the interactions between the RSV polymerase and the RNA promoters and provide the structural basis for the initiation of RNA synthesis at positions 1 and 3 of the RSV promoters. These structures offer a deeper understanding of the pre-initiation state of the RSV polymerase and could aid in antiviral research against RSV.


  • Organizational Affiliation

    Department of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-directed RNA polymerase L2,165Respiratory syncytial virus A2Mutation(s): 0 
EC: 2.7.7.48 (PDB Primary Data), 3.6.1 (PDB Primary Data), 2.7.7.88 (PDB Primary Data), 2.1.1.375 (PDB Primary Data)
UniProt
Find proteins for P28887 (Human respiratory syncytial virus A (strain A2))
Explore P28887 
Go to UniProtKB:  P28887
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP28887
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Phosphoprotein
B, C, D, E
241Respiratory syncytial virus A2Mutation(s): 0 
UniProt
Find proteins for P03421 (Human respiratory syncytial virus A (strain A2))
Explore P03421 
Go to UniProtKB:  P03421
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP03421
Sequence Annotations
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  • Reference Sequence

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 3
MoleculeChains LengthOrganismImage
RNA (5'-R(*UP*UP*UP*UP*UP*CP*UP*CP*GP*U)-3')F [auth T]10Respiratory syncytial virus A2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.41 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM130950
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesU24GM116788
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesU24GM116789
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesU24GM129539
Simons FoundationUnited StatesSF349247

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-20
    Type: Initial release
  • Version 1.1: 2024-01-03
    Changes: Database references
  • Version 1.2: 2024-01-31
    Changes: Database references