8SFL

WT CRISPR-Cas12a with a 15bp R-loop

PDB DOI: https://doi.org/10.2210/pdb8SFL/pdb
EM Map EMD-40444: EMDB EMDataResource

Classification: DNA BINDING PROTEIN/DNA/RNA
Organism(s): Acidaminococcus sp. BV3L6, synthetic construct
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-04-11 Released: 2024-07-03
Deposition Author(s): Strohkendl, I., Taylor, D.W.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

WT CRISPR-Cas12a with a 15bp R-loop

Strohkendl, I., Taylor, D.W.

To be published.

Macromolecule Content

Total Structure Weight: 201.57 kDa
Atom Count: 12,971
Modelled Residue Count: 1,410
Deposited Residue Count: 1,471
Unique protein chains: 1
Unique nucleic acid chains: 3

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR-associated endonuclease Cas12a	A	1,311	Acidaminococcus sp. BV3L6	Mutation(s): 0 Gene Names: cas12a, cpf1, HMPREF1246_0236 EC: 3.1.21.1 (PDB Primary Data), 4.6.1.22 (PDB Primary Data)
UniProt
Find proteins for U2UMQ6 (Acidaminococcus sp. (strain BV3L6)) Explore U2UMQ6 Go to UniProtKB: U2UMQ6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	U2UMQ6
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Length	Organism	Image
RNA (34-MER)	B	48	synthetic construct
Sequence Annotations Expand
Reference Sequence

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Entity ID: 3
Molecule	Chains	Length	Organism	Image
DNA (40-MER)	C	56	synthetic construct
Sequence Annotations Expand
Reference Sequence

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Entity ID: 4
Molecule	Chains	Length	Organism	Image
DNA (40-MER)	D	56	synthetic construct
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-07-03

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R35GM138348

Revision History (Full details and data files)

Version 1.0: 2024-07-03
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.