8S6Y | pdb_00008s6y

Co-crystal structure of TEAD1 with OPN-9652


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 
    0.258 (Depositor), 0.263 (DCC) 
  • R-Value Work: 
    0.223 (Depositor), 0.226 (DCC) 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Targeting TAZ-TEAD in minimal residual disease enhances the duration of targeted therapy in melanoma models.

Ott, C.A.Purwin, T.J.Chen, P.Y.Chowdhury, S.Mellor, G.L.Luo, K.Mersky, G.L.Tiago, M.Madden, W.D.Varney, S.D.Erkes, D.A.Lamar, J.Capparelli, C.Bollag, G.Aplin, A.E.

(2025) Nat Commun 16: 9655-9655

  • DOI: https://doi.org/10.1038/s41467-025-64682-7
  • Primary Citation of Related Structures:  
    8S6Y

  • PubMed Abstract: 

    Targeted therapies in cancer are limited by cells exhibiting drug tolerance. We aimed to target drug tolerance in order to delay the development of acquired resistance. In melanoma, tolerance to MAPK pathway inhibitors is associated with loss of SOX10 and an enhanced TEAD transcriptional program. We show that loss of SOX10 is sufficient to up-regulate TEAD targets with dependence on the co-activator, TAZ. Active TAZ is sufficient to mediate tolerance to BRAF inhibitors and MEK inhibitors. We develop two covalent inhibitors, OPN-9643 and OPN-9652, designed to target the central palmitate binding pocket of TEADs. In SOX10-deficient cells, OPN-9643 and OPN-9652 reduce TEAD-dependent reporter activity and expression of TEAD targets, CTGF and CYR61. OPN-9643 and OPN-9652 treatment enhances the inhibitory effects of MAPK-targeted therapies in 2D and 3D growth assays in SOX10 knockout cells and reverses tolerance mediated by active TAZ. In vivo, OPN-9652 delays the onset of acquired resistance to BRAF inhibitors and MEK inhibitors from minimal residual disease. Thus, TAZ-TEAD activity plays an important role in melanoma drug tolerance and the development of acquired resistance.


  • Organizational Affiliation
    • Department of Pharmacology, Physiology, and Cancer Biology, Thomas Jefferson University, Philadelphia, PA, 19107, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcriptional enhancer factor TEF-1A [auth AAA],
B [auth BBB],
C [auth CCC],
D [auth DDD]
217Homo sapiensMutation(s): 0 
Gene Names: TEAD1TCF13TEF1
UniProt & NIH Common Fund Data Resources
Find proteins for P28347 (Homo sapiens)
Explore P28347 
Go to UniProtKB:  P28347
PHAROS:  P28347
GTEx:  ENSG00000187079 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP28347
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1H5I (Subject of Investigation/LOI)
Query on A1H5I

Download Ideal Coordinates CCD File 
BA [auth CCC],
E [auth AAA],
OA [auth DDD],
Q [auth BBB]
1-[7-[3-fluoranyl-4-(trifluoromethyl)phenoxy]-3,4-dihydro-1~{H}-isoquinolin-2-yl]propan-1-one
C19 H17 F4 N O2
DTKJDFBXPMKXOJ-UHFFFAOYSA-N
PEG
Query on PEG

Download Ideal Coordinates CCD File 
RA [auth DDD],
X [auth BBB]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
SO4
Query on SO4

Download Ideal Coordinates CCD File 
FA [auth CCC]
G [auth AAA]
GA [auth CCC]
H [auth AAA]
HA [auth CCC]
FA [auth CCC],
G [auth AAA],
GA [auth CCC],
H [auth AAA],
HA [auth CCC],
J [auth AAA],
N [auth AAA],
SA [auth DDD],
TA [auth DDD],
U [auth BBB],
V [auth BBB],
W [auth BBB]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
GOL
Query on GOL

Download Ideal Coordinates CCD File 
O [auth AAA]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
AA [auth BBB]
CA [auth CCC]
DA [auth CCC]
EA [auth CCC]
F [auth AAA]
AA [auth BBB],
CA [auth CCC],
DA [auth CCC],
EA [auth CCC],
F [auth AAA],
I [auth AAA],
IA [auth CCC],
JA [auth CCC],
K [auth AAA],
KA [auth CCC],
L [auth AAA],
LA [auth CCC],
M [auth AAA],
MA [auth CCC],
NA [auth CCC],
P [auth AAA],
PA [auth DDD],
QA [auth DDD],
R [auth BBB],
S [auth BBB],
T [auth BBB],
Y [auth BBB],
Z [auth BBB]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free:  0.258 (Depositor), 0.263 (DCC) 
  • R-Value Work:  0.223 (Depositor), 0.226 (DCC) 
Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 120.957α = 90
b = 120.957β = 90
c = 155.52γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
autoPROCdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data

  • Released Date: 2025-07-30 
  • Deposition Author(s): Aplin, A.E.

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-30
    Type: Initial release
  • Version 1.1: 2025-11-26
    Changes: Database references