8S6J

NavMs in complex with riluzole

PDB DOI: https://doi.org/10.2210/pdb8S6J/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Magnetococcus marinus MC-1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes
Membrane Protein: Yes PDBTM

Deposited: 2024-02-27 Released: 2024-09-18
Deposition Author(s): Hollingworth, D., Sula, A., Mykhaylyk, V., Wallace, B.A.
Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.245
R-Value Work: 0.229

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Structural basis for the rescue of hyperexcitable cells by the Amyotrophic Lateral Sclerosis drug Riluzole

Hollingworth, D., Sula, A., Mykhaylyk, V., Wallace, B.A.

To be published.

Macromolecule Content

Total Structure Weight: 32.21 kDa
Atom Count: 2,126
Modelled Residue Count: 255
Deposited Residue Count: 277
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ion transport protein	A	277	Magnetococcus marinus MC-1	Mutation(s): 1 Gene Names: Mmc1_0798 Membrane Entity: Yes
UniProt
Find proteins for A0L5S6 (Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1)) Explore A0L5S6 Go to UniProtKB: A0L5S6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0L5S6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
2CV Query on 2CV Download Ideal Coordinates CCD File SDF format, chain F [auth A] MOL2 format, chain F [auth A]	F [auth A]	HEGA-10 C₁₈ H₃₇ N O₇ ITEIKACYSCODFV-ATLSCFEFSA-N		Interactions Focus chain F [auth A]
PG6 Query on PG6 Download Ideal Coordinates CCD File SDF format, chain G [auth A] MOL2 format, chain G [auth A]	G [auth A]	1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE C₁₂ H₂₆ O₆ DMDPGPKXQDIQQG-UHFFFAOYSA-N		Interactions Focus chain G [auth A]
657 (Subject of Investigation/LOI) Query on 657 Download Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A]	E [auth A]	6-(trifluoromethoxy)-1,3-benzothiazol-2-amine C₈ H₅ F₃ N₂ O S FTALBRSUTCGOEG-UHFFFAOYSA-N		Interactions Focus chain E [auth A]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain I [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A]	H [auth A], I [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain H [auth A] Focus chain I [auth A]
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] SDF format, chain D [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A]	B [auth A], C [auth A], D [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A]