8S1M

Crystal structure of human GABARAP fused to EGFR (1076-1099)

• PDB DOI: https://doi.org/10.2210/pdb8S1M/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2024-02-15 Released: 2024-08-14 
• Deposition Author(s): Ueffing, A., Willbold, D., Weiergraeber, O.H.
• Funding Organization(s): German Research Foundation (DFG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 0.230 
• R-Value Work: 0.203 
• R-Value Observed: 0.205 

Starting Model: experimental

Literature

Crystal structure of human GABARAP fused to EGFR (1076-1099)

Ueffing, A., Willbold, D., Weiergraeber, O.H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 17.03 kDa 
• Atom Count: 1,134 
• Modelled Residue Count: 137 
• Deposited Residue Count: 145 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Epidermal growth factor receptor,Gamma-aminobutyric acid receptor-associated protein	A	145	Homo sapiens	Mutation(s): 0  Gene Names: EGFR, ERBB, ERBB1, HER1, GABARAP, FLC3B, HT004 EC: 2.7.10.1
UniProt & NIH Common Fund Data Resources
Find proteins for P00533 (Homo sapiens) Explore P00533  Go to UniProtKB:  P00533
PHAROS:  P00533 GTEx:  ENSG00000146648
Find proteins for O95166 (Homo sapiens) Explore O95166  Go to UniProtKB:  O95166
PHAROS:  O95166 GTEx:  ENSG00000170296
UniProt Groups	P00533O95166

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	C [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
CL	B [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 0.230 
• R-Value Work: 0.203 
• R-Value Observed: 0.205 
• Space Group: I 2 3
• Diffraction Data: https://doi.org/10.15151/ESRF-DC-1524662410

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 101.28	α = 90
b = 101.28	β = 90
c = 101.28	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-08-14 
Deposition Author(s): Ueffing, A., Willbold, D., Weiergraeber, O.H.

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Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	267205415

Revision History  

• Version 1.0: 2024-08-14
  Type: Initial release