8RUY | pdb_00008ruy

Structure of IFTA and IFTB in Retrograde Intraflagellar transport trains


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 15.4 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Extensive structural rearrangement of intraflagellar transport trains underpins bidirectional cargo transport.

Lacey, S.E.Graziadei, A.Pigino, G.

(2024) Cell 187: 4621-4636.e18

  • DOI: https://doi.org/10.1016/j.cell.2024.06.041
  • Primary Citation of Related Structures:  
    8RUY

  • PubMed Abstract: 

    Bidirectional transport in cilia is carried out by polymers of the IFTA and IFTB protein complexes, called anterograde and retrograde intraflagellar transport (IFT) trains. Anterograde trains deliver cargoes from the cell to the cilium tip, then convert into retrograde trains for cargo export. We set out to understand how the IFT complexes can perform these two directly opposing roles before and after conversion. We use cryoelectron tomography and in situ cross-linking mass spectrometry to determine the structure of retrograde IFT trains and compare it with the known structure of anterograde trains. The retrograde train is a 2-fold symmetric polymer organized around a central thread of IFTA complexes. We conclude that anterograde-to-retrograde remodeling involves global rearrangements of the IFTA/B complexes and requires complete disassembly of the anterograde train. Finally, we describe how conformational changes to cargo-binding sites facilitate unidirectional cargo transport in a bidirectional system.


  • Organizational Affiliation
    • Human Technopole, Milan 20157, Italy.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 1441,367Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport particle protein 1401,409Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Osm-6-like proteinC [auth H],
N [auth h]
454Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 80D [auth J],
P [auth j]
765Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
IFT54E [auth K],
Q [auth k]
510Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport particle protein IFT20F [auth L],
R [auth l]
135Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Clusterin-associated protein 1G [auth N],
S [auth n]
443Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 74H [auth O]641Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 81I [auth P]683Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 27J [auth Q]204Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 25K [auth R]189Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 46L [auth S],
T [auth s]
344Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 22M [auth T]192Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 172O [auth i],
Z [auth I]
1,755Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 122 homologU [auth C]1,239Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 121V [auth D]1,224Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 139W [auth E]1,355Chlamydomonas reinhardtiiMutation(s): 1 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
IFT88BA [auth f],
X [auth F]
782Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
IFT70CA [auth g],
Y [auth G]
647Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 57AA [auth M],
DA [auth m]
469Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 15.4 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1.3

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union--
Other government--

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-24
    Type: Initial release
  • Version 1.1: 2024-11-06
    Changes: Data collection, Structure summary
  • Version 1.2: 2025-08-06
    Changes: Data collection, Database references