8RR6

MenT3 (aka TglT) toxin (Rv1045) from Mycobacterium tuberculosis H37Rv, non-phosphorylated


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.207 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Inducible auto-phosphorylation regulates a widespread family of nucleotidyltransferase toxins.

Arrowsmith, T.J.Xu, X.Xu, S.Usher, B.Stokes, P.Guest, M.Bronowska, A.K.Genevaux, P.Blower, T.R.

(2024) Nat Commun 15: 7719-7719

  • DOI: https://doi.org/10.1038/s41467-024-51934-1
  • Primary Citation of Related Structures:  
    8RR5, 8RR6

  • PubMed Abstract: 

    Nucleotidyltransferases (NTases) control diverse physiological processes, including RNA modification, DNA replication and repair, and antibiotic resistance. The Mycobacterium tuberculosis NTase toxin family, MenT, modifies tRNAs to block translation. MenT toxin activity can be stringently regulated by diverse MenA antitoxins. There has been no unifying mechanism linking antitoxicity across MenT homologues. Here we demonstrate through structural, biochemical, biophysical and computational studies that despite lacking kinase motifs, antitoxin MenA 1 induces auto-phosphorylation of MenT 1 by repositioning the MenT 1 phosphoacceptor T39 active site residue towards bound nucleotide. Finally, we expand this predictive model to explain how unrelated antitoxin MenA 3 is similarly able to induce auto-phosphorylation of cognate toxin MenT 3 . Our study reveals a conserved mechanism for the control of tuberculosis toxins, and demonstrates how active site auto-phosphorylation can regulate the activity of widespread NTases.


  • Organizational Affiliation

    Department of Biosciences, Durham University, Durham, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleotidyl transferase AbiEii/AbiGii toxin family protein292Mycobacterium tuberculosis H37RvMutation(s): 0 
Gene Names: Rv1045
UniProt
Find proteins for P96356 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore P96356 
Go to UniProtKB:  P96356
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP96356
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.207 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 95.272α = 90
b = 95.272β = 90
c = 69.028γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Engineering and Physical Sciences Research CouncilUnited KingdomEP/S022791/1

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-11
    Type: Initial release