8RPP

Crystal structure of the JIP1-JIP2-SH3 heterodimer and the JIP2-JIP2-SH3 homodimer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.148 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of homodimerization of the JNK scaffold protein JIP2 and its heterodimerization with JIP1.

Marino Perez, L.Ielasi, F.S.Lee, A.Delaforge, E.Juyoux, P.Tengo, M.Davis, R.J.Palencia, A.Jensen, M.R.

(2024) Structure 

  • DOI: https://doi.org/10.1016/j.str.2024.06.010
  • Primary Citation of Related Structures:  
    8RPP

  • PubMed Abstract: 

    The scaffold proteins JIP1 and JIP2 intervene in the c-Jun N-terminal kinase (JNK) pathway to mediate signaling specificity by coordinating the simultaneous assembly of multiple kinases. Using NMR, we demonstrate that JIP1 and JIP2 heterodimerize via their SH3 domains with the affinity of heterodimerization being comparable to homodimerization. We present the high-resolution crystal structure of the JIP2-SH3 homodimer and the JIP1-JIP2-SH3 heterodimeric complex. The JIP2-SH3 structure reveals how charge differences in residues at its dimer interface lead to formation of compensatory hydrogen bonds and salt bridges, distinguishing it from JIP1-SH3. In the JIP1-JIP2-SH3 complex, structural features of each homodimer are employed to stabilize the heterodimer. Building on these insights, we identify key residues crucial for stabilizing the dimer of both JIP1 and JIP2. Through targeted mutations in cellulo, we demonstrate a functional role for the dimerization of the JIP1 and JIP2 scaffold proteins in activation of the JNK signaling pathway.


  • Organizational Affiliation

    University Grenoble Alpes, CEA, CNRS, IBS, Grenoble, France; Departament de Química, Universitat de les Illes Balears, Institut Universitari d'Investigació en Ciències de la Salut (IUNICS), Institut de Recerca en Ciències de la Salut (IdISBa), Palma, Spain.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
C-Jun-amino-terminal kinase-interacting protein 2
A, B, C
63Homo sapiensMutation(s): 0 
Gene Names: MAPK8IP2IB2JIP2PRKM8IPL
UniProt & NIH Common Fund Data Resources
Find proteins for Q13387 (Homo sapiens)
Explore Q13387 
Go to UniProtKB:  Q13387
PHAROS:  Q13387
GTEx:  ENSG00000008735 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13387
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
C-Jun-amino-terminal kinase-interacting protein 161Homo sapiensMutation(s): 0 
Gene Names: MAPK8IP1IB1JIP1PRKM8IP
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UQF2 (Homo sapiens)
Explore Q9UQF2 
Go to UniProtKB:  Q9UQF2
PHAROS:  Q9UQF2
GTEx:  ENSG00000121653 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UQF2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.148 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 68.47α = 90
b = 68.47β = 90
c = 177.259γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
AutoProcessdata reduction
STARANISOdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceScaffoldDisorder
Agence Nationale de la Recherche (ANR)FranceImpulscience
Agence Nationale de la Recherche (ANR)FranceANR-17-EURE-0003
Agence Nationale de la Recherche (ANR)FranceANR-10-INBS-0005-02
Fondation pour la Recherche Medicale (FRM)FranceSPF201909009258

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-10
    Type: Initial release
  • Version 1.1: 2024-07-31
    Changes: Database references