8RPK

AMP-forming Acetyl-CoA synthetase from Chloroflexota bacterium without bound ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.62 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.163 

Starting Model: in silico
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Literature

Acetyl-CoA synthetase activity is enzymatically regulated by lysine acetylation using acetyl-CoA or acetyl-phosphate as donor molecule.

Qin, C.Graf, L.G.Striska, K.Janetzky, M.Geist, N.Specht, R.Schulze, S.Palm, G.J.Girbardt, B.Dorre, B.Berndt, L.Kemnitz, S.Doerr, M.Bornscheuer, U.T.Delcea, M.Lammers, M.

(2024) Nat Commun 15: 6002-6002

  • DOI: https://doi.org/10.1038/s41467-024-49952-0
  • Primary Citation of Related Structures:  
    8RPK, 8RPL

  • PubMed Abstract: 

    The AMP-forming acetyl-CoA synthetase is regulated by lysine acetylation both in bacteria and eukaryotes. However, the underlying mechanism is poorly understood. The Bacillus subtilis acetyltransferase AcuA and the AMP-forming acetyl-CoA synthetase AcsA form an AcuA•AcsA complex, dissociating upon lysine acetylation of AcsA by AcuA. Crystal structures of AcsA from Chloroflexota bacterium in the apo form and in complex with acetyl-adenosine-5'-monophosphate (acetyl-AMP) support the flexible C-terminal domain adopting different conformations. AlphaFold2 predictions suggest binding of AcuA stabilizes AcsA in an undescribed conformation. We show the AcuA•AcsA complex dissociates upon acetyl-coenzyme A (acetyl-CoA) dependent acetylation of AcsA by AcuA. We discover an intrinsic phosphotransacetylase activity enabling AcuA•AcsA generating acetyl-CoA from acetyl-phosphate (AcP) and coenzyme A (CoA) used by AcuA to acetylate and inactivate AcsA. Here, we provide mechanistic insights into the regulation of AMP-forming acetyl-CoA synthetases by lysine acetylation and discover an intrinsic phosphotransacetylase allowing modulation of its activity based on AcP and CoA levels.


  • Organizational Affiliation

    Department of Synthetic and Structural Biochemistry, Institute of Biochemistry, University of Greifswald, 17489, Greifswald, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Acetate--CoA ligase
A, B, C, D
657Chloroflexota bacteriumMutation(s): 0 
Gene Names: acsE6J36_13485
EC: 6.2.1.1
UniProt
Find proteins for A0A535FEC2 (Chloroflexota bacterium)
Explore A0A535FEC2 
Go to UniProtKB:  A0A535FEC2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A535FEC2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.62 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.163 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 161.352α = 90
b = 161.352β = 90
c = 814.182γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-19
    Type: Initial release
  • Version 1.1: 2024-07-31
    Changes: Database references