8RME

Structure of the core ISC complex under turnover conditions (frataxin-bound)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.49 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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Literature

Two-stage binding of mitochondrial ferredoxin-2 to the core iron-sulfur cluster assembly complex.

Steinhilper, R.Boss, L.Freibert, S.A.Schulz, V.Krapoth, N.Kaltwasser, S.Lill, R.Murphy, B.J.

(2024) Nat Commun 15: 10559-10559

  • DOI: https://doi.org/10.1038/s41467-024-54585-4
  • Primary Citation of Related Structures:  
    8RMC, 8RMD, 8RME, 8RMF, 8RMG

  • PubMed Abstract: 

    Iron-sulfur (FeS) protein biogenesis in eukaryotes begins with the de novo assembly of [2Fe-2S] clusters by the mitochondrial core iron-sulfur cluster assembly (ISC) complex. This complex comprises the scaffold protein ISCU2, the cysteine desulfurase subcomplex NFS1-ISD11-ACP1, the allosteric activator frataxin (FXN) and the electron donor ferredoxin-2 (FDX2). The structural interaction of FDX2 with the complex remains unclear. Here, we present cryo-EM structures of the human FDX2-bound core ISC complex showing that FDX2 and FXN compete for overlapping binding sites. FDX2 binds in either a 'distal' conformation, where its helix F interacts electrostatically with an arginine patch of NFS1, or a 'proximal' conformation, where this interaction tightens and the FDX2-specific C terminus binds to NFS1, facilitating the movement of the [2Fe-2S] cluster of FDX2 closer to the ISCU2 FeS cluster assembly site for rapid electron transfer. Structure-based mutational studies verify the contact areas of FDX2 within the core ISC complex.


  • Organizational Affiliation

    Redox and Metalloprotein Research Group, Max Planck Institute of Biophysics, Max-von-Laue-Str. 3, 60438, Frankfurt am Main, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform Mitochondrial of Cysteine desulfuraseA,
F [auth E]
404Homo sapiensMutation(s): 0 
Gene Names: NFS1NIFSHUSSY-08
EC: 2.8.1.7
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PHAROS:  Q9Y697
GTEx:  ENSG00000244005 
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UniProt GroupQ9Y697
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
LYR motif-containing protein 4B,
G [auth F]
115Homo sapiensMutation(s): 0 
Gene Names: LYRM4C6orf149ISD11CGI-203
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PHAROS:  Q9HD34
GTEx:  ENSG00000214113 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 1 of Iron-sulfur cluster assembly enzyme ISCUC [auth D],
I [auth H]
143Homo sapiensMutation(s): 0 
Gene Names: ISCUNIFUN
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PHAROS:  Q9H1K1
GTEx:  ENSG00000136003 
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UniProt GroupQ9H1K1
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Frataxin mature formD [auth I]133Homo sapiensMutation(s): 0 
Gene Names: FXNFRDAX25
EC: 1.16.3.1
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PHAROS:  Q16595
GTEx:  ENSG00000165060 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl carrier proteinE [auth C],
H [auth G]
78Escherichia coli BL21(DE3)Mutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.49 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.1.2
MODEL REFINEMENTPHENIX1.20.1

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Max Planck SocietyGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-18
    Type: Initial release