8RJJ

Deposited: 2023-12-21 Released: 2024-09-04
Deposition Author(s): Augestad, E.H., Olesen, C.H., Groenberg, C., Soerensen, A., Velazquez-Moctezuma, R., Fanalista, M., Bukh, J., Wang, K., Gourdon, P., Prentoe, J.
Funding Organization(s): Lundbeckfonden, Novo Nordisk Foundation

Experimental Data Snapshot

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

(2024) Nature

Macromolecule Content

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Genome polyprotein	A [auth C], C [auth A]	191	Hepacivirus hominis	Mutation(s): 0 Gene Names: E1
UniProt
Find proteins for Q81424 (Hepacivirus hominis) Explore Q81424 Go to UniProtKB: Q81424
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q81424
Glycosylation
Glycosylation Sites: 1	Glycosylation Focus chain A [auth C] Focus chain C [auth A]
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
HCV S52 E2	B [auth D], D [auth B]	369	Hepacivirus hominis	Mutation(s): 0
UniProt
Find proteins for A9YFN8 (Recombinant Hepatitis C virus S52/JFH1) Explore A9YFN8 Go to UniProtKB: A9YFN8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A9YFN8
Glycosylation
Glycosylation Sites: 4	Glycosylation Focus chain B [auth D] Focus chain D [auth B]
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	E [auth L], F [auth E], G [auth F], H [auth G], I [auth H], E [auth L], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M, N	2		N-Glycosylation	Interactions Focus chain E [auth L] Focus chain F [auth E] Focus chain G [auth F] Focus chain H [auth G] Focus chain I [auth H] Focus chain J [auth I] Focus chain K [auth J] Focus chain L [auth K] Focus chain M Focus chain N Interactions & Density Focus chain E [auth L] Focus chain F [auth E] Focus chain G [auth F] Focus chain H [auth G] Focus chain I [auth H] Focus chain J [auth I] Focus chain K [auth J] Focus chain L [auth K] Focus chain M Focus chain N

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	O, P, Q, R, S O, P, Q, R, S, T, U, V	3		N-Glycosylation	Interactions Focus chain O Focus chain P Focus chain Q Focus chain R Focus chain S Focus chain T Focus chain U Focus chain V Interactions & Density Focus chain O Focus chain P Focus chain Q Focus chain R Focus chain S Focus chain T Focus chain U Focus chain V

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG (Subject of Investigation/LOI) Query on NAG Download Ideal Coordinates CCD File SDF format, chain X [auth B] SDF format, chain W [auth D] MOL2 format, chain X [auth B] MOL2 format, chain W [auth D]	W [auth D], X [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain W [auth D] Focus chain X [auth B] Interactions & Density Focus chain W [auth D] Focus chain X [auth B]