8RFB

Cryo-EM structure of the R243C mutant of human Prolyl Endopeptidase-Like (PREPL) protein involved in Congenital myasthenic syndrome-22 (CMS22)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.01 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Missense variants in CMS22 patients reveal that PREPL has both enzymatic and nonenzymatic functions.

Monnens, Y.Theodoropoulou, A.Rosier, K.Bhalla, K.Mahy, A.Vanhoutte, R.Meulemans, S.Cavani, E.Antanasijevic, A.Lemmens, I.Lee, J.A.Spellicy, C.J.Schroer, R.J.Maselli, R.A.Laverty, C.G.Agostinis, P.Pagliarini, D.J.Verhelst, S.Marcaida, M.J.Rochtus, A.Dal Peraro, M.Creemers, J.W.

(2024) JCI Insight 9

  • DOI: https://doi.org/10.1172/jci.insight.179276
  • Primary Citation of Related Structures:  
    8RFB

  • PubMed Abstract: 

    Congenital myasthenic syndrome-22 (CMS22, OMIM 616224) is a rare genetic disorder caused by deleterious genetic variation in the prolyl endopeptidase-like (PREPL) gene. Previous reports have described patients with deletions and nonsense variants in PREPL, but nothing is known about the effect of missense variants in the pathology of CMS22. In this study, we have functionally characterized missense variants in PREPL from three CMS22 patients, all with hallmark phenotypes. Biochemical evaluation revealed that these missense variants do not impair hydrolase activity, thereby challenging the conventional diagnostic criteria and disease mechanism. Structural analysis showed that the variants affect regions most likely involved in intra-protein or protein-protein interactions. Indeed, binding to a selected group of known interactors was differentially reduced for the three mutants. The importance of non-hydrolytic functions of PREPL was investigated in catalytically inactive PREPL p.Ser559Ala cell lines which showed that hydrolytic activity of PREPL is needed for normal mitochondrial function but not for regulating AP1-mediated transport in the trans-Golgi network. In conclusion, these studies showed that CMS22 can be caused not only by deletion and truncation of PREPL but also by missense variants that do not necessarily result in a loss of hydrolytic activity of PREPL.


  • Organizational Affiliation

    Laboratory for Biochemical Neuroendocrinology, Department of Human Genetics, KU Leuven, Leuven, Belgium.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Prolyl endopeptidase-like639Homo sapiensMutation(s): 1 
Gene Names: PREPLKIAA0436
EC: 3.4.21
UniProt & NIH Common Fund Data Resources
Find proteins for Q4J6C6 (Homo sapiens)
Explore Q4J6C6 
Go to UniProtKB:  Q4J6C6
PHAROS:  Q4J6C6
GTEx:  ENSG00000138078 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4J6C6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.01 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland--

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-04
    Type: Initial release
  • Version 1.1: 2024-09-18
    Changes: Data collection, Database references
  • Version 1.2: 2024-10-09
    Changes: Data collection, Structure summary