8RC6

Cryo-EM structure of hexameric BTB domain of Drosophila CG6765 protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


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Literature

The Arthropoda-specific Tramtrack group BTB protein domains use previously unknown interface to form hexamers.

Bonchuk, A.N.Balagurov, K.I.Baradaran, R.Boyko, K.M.Sluchanko, N.N.Khrustaleva, A.M.Burtseva, A.D.Arkova, O.V.Khalisova, K.K.Popov, V.O.Naschberger, A.Georgiev, P.G.

(2024) Elife 13

  • DOI: https://doi.org/10.7554/eLife.96832
  • Primary Citation of Related Structures:  
    8RC6

  • PubMed Abstract: 

    BTB (Bric-a-brack, Tramtrack and Broad Complex) is a diverse group of protein-protein interaction domains found within metazoan proteins. Transcription factors contain a dimerizing BTB subtype with a characteristic N-terminal extension. The Tramtrack group (TTK) is a distinct type of BTB domain, which can multimerize. Single-particle cryo-EM microscopy revealed that the TTK-type BTB domains assemble into a hexameric structure consisting of three canonical BTB dimers connected through a previously uncharacterized interface. We demonstrated that the TTK-type BTB domains are found only in Arthropods and have undergone lineage-specific expansion in modern insects. The Drosophila genome encodes 24 transcription factors with TTK-type BTB domains, whereas only four have non‑TTK‑type BTB domains. Yeast two-hybrid analysis revealed that the TTK-type BTB domains have an unusually broad potential for heteromeric associations presumably through dimer-dimer interaction interface. Thus, the TTK-type BTB domains are a structurally and functionally distinct group of protein domains specific to Arthropodan transcription factors.


  • Organizational Affiliation

    Department of the Control of Genetic Processes, Russian Academy of Sciences, Moscow, Russian Federation.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
BTB domain of CG6765 protein
A, B, C, D, E
A, B, C, D, E, F
131Drosophila melanogasterMutation(s): 0 
Gene Names: Dmel\CG6765CG6765Dmel_CG6765
UniProt
Find proteins for Q9VSL1 (Drosophila melanogaster)
Explore Q9VSL1 
Go to UniProtKB:  Q9VSL1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VSL1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION5.0

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Russian Science FoundationRussian Federation19-74-10099

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-11
    Type: Initial release