8R7P

human connexin-36 gap junction channel

PDB DOI: https://doi.org/10.2210/pdb8R7P/pdb
EM Map EMD-18987: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2023-11-27 Released: 2024-07-03
Deposition Author(s): Ding, X.Y., Blum, T.B., Korkhov, V.M.
Funding Organization(s): Swiss National Science Foundation

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural basis of connexin-36 gap junction channel inhibition.

Ding, X., Aureli, S., Vaithia, A., Lavriha, P., Schuster, D., Khanppnavar, B., Li, X., Blum, T.B., Picotti, P., Gervasio, F.L., Korkhov, V.M.

(2024) Cell Discov 10: 68-68

PubMed: 38890333 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41421-024-00691-y
Primary Citation of Related Structures:
8QOJ, 8R7P, 8R7Q

Organizational Affiliation

Laboratory of Biomolecular Research, Paul Scherrer Institute, Villigen, Switzerland.

Macromolecule Content

Total Structure Weight: 444.95 kDa
Atom Count: 16,818
Modelled Residue Count: 2,076
Deposited Residue Count: 3,960
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gap junction delta-2 protein	A [auth L] B [auth A] C [auth B] D [auth C] E [auth D] A [auth L], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K]	330	Homo sapiens	Mutation(s): 0 Gene Names: GJD2 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UKL4 (Homo sapiens) Explore Q9UKL4 Go to UniProtKB: Q9UKL4
PHAROS: Q9UKL4 GTEx: ENSG00000159248
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9UKL4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-07-03

Deposition Author(s):

Funding Organization	Location	Grant Number
Swiss National Science Foundation	Switzerland	--

Revision History (Full details and data files)

Version 1.0: 2024-07-03
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.