8QXS

CryoEM structure of a GroEL14-GroES7 complex in presence of ADP-BeFx with wide GroEL7 trans ring conformation

PDB DOI: https://doi.org/10.2210/pdb8QXS/pdb
EM Map EMD-18735: EMDB EMDataResource

Classification: CHAPERONE
Organism(s): Escherichia coli BL21(DE3)
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-10-25 Released: 2024-07-03
Deposition Author(s): Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Visualizing chaperonin function in situ by cryo-electron tomography

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature

Macromolecule Content

Total Structure Weight: 881.78 kDa
Atom Count: 59,269
Modelled Residue Count: 8,008
Deposited Residue Count: 8,337
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chaperonin GroEL	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	547	Escherichia coli BL21(DE3)	Mutation(s): 0 Gene Names: groEL, groL, mopA, b4143, JW4103 EC: 5.6.1.7
UniProt
Find proteins for P0A6F5 (Escherichia coli (strain K12)) Explore P0A6F5 Go to UniProtKB: P0A6F5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A6F5
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Co-chaperonin GroES	O, P, Q, R, S O, P, Q, R, S, T, U	97	Escherichia coli BL21(DE3)	Mutation(s): 0 Gene Names: groES, groS, mopB, b4142, JW4102
UniProt
Find proteins for P0A6F9 (Escherichia coli (strain K12)) Explore P0A6F9 Go to UniProtKB: P0A6F9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A6F9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP Query on ADP Download Ideal Coordinates CCD File SDF format, chain DB [auth J] SDF format, chain PA [auth F] SDF format, chain TA [auth G] SDF format, chain AB [auth I] SDF format, chain DA [auth C] SDF format, chain GB [auth K] SDF format, chain HA [auth D] SDF format, chain JB [auth L] SDF format, chain LA [auth E] SDF format, chain MB [auth M] SDF format, chain PB [auth N] SDF format, chain V [auth A] SDF format, chain XA [auth H] SDF format, chain Z [auth B] MOL2 format, chain DB [auth J] MOL2 format, chain PA [auth F] MOL2 format, chain TA [auth G] MOL2 format, chain AB [auth I] MOL2 format, chain DA [auth C] MOL2 format, chain GB [auth K] MOL2 format, chain HA [auth D] MOL2 format, chain JB [auth L] MOL2 format, chain LA [auth E] MOL2 format, chain MB [auth M] MOL2 format, chain PB [auth N] MOL2 format, chain V [auth A] MOL2 format, chain XA [auth H] MOL2 format, chain Z [auth B]	AB [auth I] DA [auth C] DB [auth J] GB [auth K] HA [auth D] AB [auth I], DA [auth C], DB [auth J], GB [auth K], HA [auth D], JB [auth L], LA [auth E], MB [auth M], PA [auth F], PB [auth N], TA [auth G], V [auth A], XA [auth H], Z [auth B]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain AB [auth I] Focus chain DA [auth C] Focus chain DB [auth J] Focus chain GB [auth K] Focus chain HA [auth D] Focus chain JB [auth L] Focus chain LA [auth E] Focus chain MB [auth M] Focus chain PA [auth F] Focus chain PB [auth N] Focus chain TA [auth G] Focus chain V [auth A] Focus chain XA [auth H] Focus chain Z [auth B] Interactions & Density Focus chain AB [auth I] Focus chain DA [auth C] Focus chain DB [auth J] Focus chain GB [auth K] Focus chain HA [auth D] Focus chain JB [auth L] Focus chain LA [auth E] Focus chain MB [auth M] Focus chain PA [auth F] Focus chain PB [auth N] Focus chain TA [auth G] Focus chain V [auth A] Focus chain XA [auth H] Focus chain Z [auth B]
BEF Query on BEF Download Ideal Coordinates CCD File SDF format, chain BA [auth B] SDF format, chain FA [auth C] SDF format, chain JA [auth D] SDF format, chain NA [auth E] SDF format, chain RA [auth F] SDF format, chain VA [auth G] SDF format, chain X [auth A] MOL2 format, chain BA [auth B] MOL2 format, chain FA [auth C] MOL2 format, chain JA [auth D] MOL2 format, chain NA [auth E] MOL2 format, chain RA [auth F] MOL2 format, chain VA [auth G] MOL2 format, chain X [auth A]	BA [auth B] FA [auth C] JA [auth D] NA [auth E] RA [auth F] BA [auth B], FA [auth C], JA [auth D], NA [auth E], RA [auth F], VA [auth G], X [auth A]	BERYLLIUM TRIFLUORIDE ION Be F₃ OGIAHMCCNXDTIE-UHFFFAOYSA-K		Interactions Focus chain BA [auth B] Focus chain FA [auth C] Focus chain JA [auth D] Focus chain NA [auth E] Focus chain RA [auth F] Focus chain VA [auth G] Focus chain X [auth A] Interactions & Density Focus chain BA [auth B] Focus chain FA [auth C] Focus chain JA [auth D] Focus chain NA [auth E] Focus chain RA [auth F] Focus chain VA [auth G] Focus chain X [auth A]
K Query on K Download Ideal Coordinates CCD File SDF format, chain KA [auth D] SDF format, chain LB [auth L] SDF format, chain OA [auth E] SDF format, chain OB [auth M] SDF format, chain ZA [auth H] SDF format, chain CA [auth B] SDF format, chain CB [auth I] SDF format, chain FB [auth J] SDF format, chain GA [auth C] SDF format, chain IB [auth K] SDF format, chain RB [auth N] SDF format, chain SA [auth F] SDF format, chain WA [auth G] SDF format, chain Y [auth A] MOL2 format, chain KA [auth D] MOL2 format, chain LB [auth L] MOL2 format, chain OA [auth E] MOL2 format, chain OB [auth M] MOL2 format, chain ZA [auth H] MOL2 format, chain CA [auth B] MOL2 format, chain CB [auth I] MOL2 format, chain FB [auth J] MOL2 format, chain GA [auth C] MOL2 format, chain IB [auth K] MOL2 format, chain RB [auth N] MOL2 format, chain SA [auth F] MOL2 format, chain WA [auth G] MOL2 format, chain Y [auth A]	CA [auth B] CB [auth I] FB [auth J] GA [auth C] IB [auth K] CA [auth B], CB [auth I], FB [auth J], GA [auth C], IB [auth K], KA [auth D], LB [auth L], OA [auth E], OB [auth M], RB [auth N], SA [auth F], WA [auth G], Y [auth A], ZA [auth H]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N		Interactions Focus chain CA [auth B] Focus chain CB [auth I] Focus chain FB [auth J] Focus chain GA [auth C] Focus chain IB [auth K] Focus chain KA [auth D] Focus chain LB [auth L] Focus chain OA [auth E] Focus chain OB [auth M] Focus chain RB [auth N] Focus chain SA [auth F] Focus chain WA [auth G] Focus chain Y [auth A] Focus chain ZA [auth H] Interactions & Density Focus chain CA [auth B] Focus chain CB [auth I] Focus chain FB [auth J] Focus chain GA [auth C] Focus chain IB [auth K] Focus chain KA [auth D] Focus chain LB [auth L] Focus chain OA [auth E] Focus chain OB [auth M] Focus chain RB [auth N] Focus chain SA [auth F] Focus chain WA [auth G] Focus chain Y [auth A] Focus chain ZA [auth H]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain EB [auth J] SDF format, chain MA [auth E] SDF format, chain NB [auth M] SDF format, chain QA [auth F] SDF format, chain UA [auth G] SDF format, chain AA [auth B] SDF format, chain BB [auth I] SDF format, chain EA [auth C] SDF format, chain HB [auth K] SDF format, chain IA [auth D] SDF format, chain KB [auth L] SDF format, chain QB [auth N] SDF format, chain W [auth A] SDF format, chain YA [auth H] MOL2 format, chain EB [auth J] MOL2 format, chain MA [auth E] MOL2 format, chain NB [auth M] MOL2 format, chain QA [auth F] MOL2 format, chain UA [auth G] MOL2 format, chain AA [auth B] MOL2 format, chain BB [auth I] MOL2 format, chain EA [auth C] MOL2 format, chain HB [auth K] MOL2 format, chain IA [auth D] MOL2 format, chain KB [auth L] MOL2 format, chain QB [auth N] MOL2 format, chain W [auth A] MOL2 format, chain YA [auth H]	AA [auth B] BB [auth I] EA [auth C] EB [auth J] HB [auth K] AA [auth B], BB [auth I], EA [auth C], EB [auth J], HB [auth K], IA [auth D], KB [auth L], MA [auth E], NB [auth M], QA [auth F], QB [auth N], UA [auth G], W [auth A], YA [auth H]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain AA [auth B] Focus chain BB [auth I] Focus chain EA [auth C] Focus chain EB [auth J] Focus chain HB [auth K] Focus chain IA [auth D] Focus chain KB [auth L] Focus chain MA [auth E] Focus chain NB [auth M] Focus chain QA [auth F] Focus chain QB [auth N] Focus chain UA [auth G] Focus chain W [auth A] Focus chain YA [auth H] Interactions & Density Focus chain AA [auth B] Focus chain BB [auth I] Focus chain EA [auth C] Focus chain EB [auth J] Focus chain HB [auth K] Focus chain IA [auth D] Focus chain KB [auth L] Focus chain MA [auth E] Focus chain NB [auth M] Focus chain QA [auth F] Focus chain QB [auth N] Focus chain UA [auth G] Focus chain W [auth A] Focus chain YA [auth H]