8QX8

Endosomal membrane tethering complex CORVET


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of the endosomal CORVET tethering complex.

Shvarev, D.Konig, C.Susan, N.Langemeyer, L.Walter, S.Perz, A.Frohlich, F.Ungermann, C.Moeller, A.

(2024) Nat Commun 15: 5227-5227

  • DOI: https://doi.org/10.1038/s41467-024-49137-9
  • Primary Citation of Related Structures:  
    7ZU0, 8QX8

  • PubMed Abstract: 

    Cells depend on their endolysosomal system for nutrient uptake and downregulation of plasma membrane proteins. These processes rely on endosomal maturation, which requires multiple membrane fusion steps. Early endosome fusion is promoted by the Rab5 GTPase and its effector, the hexameric CORVET tethering complex, which is homologous to the lysosomal HOPS. How these related complexes recognize their specific target membranes remains entirely elusive. Here, we solve the structure of CORVET by cryo-electron microscopy and revealed its minimal requirements for membrane tethering. As expected, the core of CORVET and HOPS resembles each other. However, the function-defining subunits show marked structural differences. Notably, we discover that unlike HOPS, CORVET depends not only on Rab5 but also on phosphatidylinositol-3-phosphate (PI3P) and membrane lipid packing defects for tethering, implying that an organelle-specific membrane code enables fusion. Our data suggest that both shape and membrane interactions of CORVET and HOPS are conserved in metazoans, thus providing a paradigm how tethering complexes function.


  • Organizational Affiliation

    Department of Biology/Chemistry, Structural Biology Section, Osnabrück University, 49076, Osnabrück, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Vacuolar protein sorting-associated protein 8A [auth F]1,298Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: VPS8VPT8YAL002WFUN15
UniProt
Find proteins for P39702 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP39702
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Vacuolar protein sorting-associated protein 33B [auth D]691Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: VPS33SLP1VAM5YLR396CL8084.15
UniProt
Find proteins for P20795 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP20795
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Vacuolar protein sorting-associated protein 16C [auth B]798Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: VPS16VAM9VPT16YPL045W
UniProt
Find proteins for Q03308 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ03308
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
E3 ubiquitin-protein ligase PEP5D [auth A]1,029Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: PEP5END1VAM1VPL9VPS11VPT11YMR231WYM9959.13
EC: 2.3.2.27
UniProt
Find proteins for P12868 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Vacuolar protein sorting-associated protein 31,011Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: VPS3VPT17YDR495CD9719.1
UniProt
Find proteins for P23643 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Vacuolar membrane protein PEP3F [auth C]918Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: PEP3VAM8VPS18VPT18YLR148WL9634.2
UniProt
Find proteins for P27801 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyUN111/5-6
German Research Foundation (DFG)GermanyMO2752/3-6
German Research Foundation (DFG)GermanySFB 944
German Research Foundation (DFG)GermanySFB 1557
German Research Foundation (DFG)GermanyINST190/196-1 FUGG
German Federal Ministry for Education and ResearchGermanyDLR 01ED2010

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-03
    Type: Initial release
  • Version 1.1: 2024-07-24
    Changes: Data collection