8QU5

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

PDB DOI: https://doi.org/10.2210/pdb8QU5/pdb
EM Map EMD-18461: EMDB EMDataResource

Classification: RIBOSOME
Organism(s): Homo sapiens
Mutation(s): Yes

Deposited: 2023-10-13 Released: 2024-06-26
Deposition Author(s): Valentin Gese, G., Cipullo, M., Rorbach, J., Hallberg, B.M.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

GTPBP8 plays a role in mitoribosome formation in human mitochondria

Cipullo, M., Valentin Gese, G., Gopalakrishna, S., Krueger, A., Lobo, V., Pirozhkova, M.A., Marks, J., Palenkova, P., Shiriaev, D., Liu, Y., Misic, J., Cai, Y., Nguyen, M., Abdelbagi, A., Li, X., Minczuk, M., Hafner, M., Benhalevy, D., Sarshad, A.A., Attanasov, I., Hallberg, B.M., Rorbach, J.

(2024) Nat Commun

Macromolecule Content

Total Structure Weight: 1,784.44 kDa
Atom Count: 89,817
Modelled Residue Count: 9,238
Deposited Residue Count: 12,682
Unique protein chains: 53
Unique nucleic acid chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L32, mitochondrial	A [auth 0]	188	Homo sapiens	Mutation(s): 0
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Find proteins for Q9BYC8 (Homo sapiens) Explore Q9BYC8 Go to UniProtKB: Q9BYC8
PHAROS: Q9BYC8 GTEx: ENSG00000106591
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UniProt Group	Q9BYC8
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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L33, mitochondrial	B [auth 1]	65	Homo sapiens	Mutation(s): 0
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Find proteins for O75394 (Homo sapiens) Explore O75394 Go to UniProtKB: O75394
PHAROS: O75394 GTEx: ENSG00000243147
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UniProt Group	O75394
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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L34, mitochondrial	C [auth 2]	92	Homo sapiens	Mutation(s): 0
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Find proteins for Q9BQ48 (Homo sapiens) Explore Q9BQ48 Go to UniProtKB: Q9BQ48
PHAROS: Q9BQ48 GTEx: ENSG00000130312
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UniProt Group	Q9BQ48
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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L35, mitochondrial	D [auth 3]	188	Homo sapiens	Mutation(s): 0
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Find proteins for Q9NZE8 (Homo sapiens) Explore Q9NZE8 Go to UniProtKB: Q9NZE8
PHAROS: Q9NZE8 GTEx: ENSG00000132313
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UniProt Group	Q9NZE8
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L39, mitochondrial	E [auth 7]	338	Homo sapiens	Mutation(s): 0
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Find proteins for Q9NYK5 (Homo sapiens) Explore Q9NYK5 Go to UniProtKB: Q9NYK5
PHAROS: Q9NYK5 GTEx: ENSG00000154719
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UniProt Group	Q9NYK5
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L40, mitochondrial	F [auth 8]	206	Homo sapiens	Mutation(s): 0
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Find proteins for Q9NQ50 (Homo sapiens) Explore Q9NQ50 Go to UniProtKB: Q9NQ50
PHAROS: Q9NQ50 GTEx: ENSG00000185608
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UniProt Group	Q9NQ50
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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L4, mitochondrial	G [auth F]	311	Homo sapiens	Mutation(s): 0
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Find proteins for Q9BYD3 (Homo sapiens) Explore Q9BYD3 Go to UniProtKB: Q9BYD3
PHAROS: Q9BYD3 GTEx: ENSG00000105364
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UniProt Group	Q9BYD3
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L9, mitochondrial	H	267	Homo sapiens	Mutation(s): 0
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Find proteins for Q9BYD2 (Homo sapiens) Explore Q9BYD2 Go to UniProtKB: Q9BYD2
PHAROS: Q9BYD2 GTEx: ENSG00000143436
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UniProt Group	Q9BYD2
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L11, mitochondrial	I [auth J]	192	Homo sapiens	Mutation(s): 0
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Find proteins for Q9Y3B7 (Homo sapiens) Explore Q9Y3B7 Go to UniProtKB: Q9Y3B7
PHAROS: Q9Y3B7 GTEx: ENSG00000174547
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L13, mitochondrial	J [auth K]	178	Homo sapiens	Mutation(s): 0
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Find proteins for Q9BYD1 (Homo sapiens) Explore Q9BYD1 Go to UniProtKB: Q9BYD1
PHAROS: Q9BYD1 GTEx: ENSG00000172172
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UniProt Group	Q9BYD1
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L14, mitochondrial	K [auth L]	145	Homo sapiens	Mutation(s): 0
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Find proteins for Q6P1L8 (Homo sapiens) Explore Q6P1L8 Go to UniProtKB: Q6P1L8
PHAROS: Q6P1L8 GTEx: ENSG00000180992
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UniProt Group	Q6P1L8
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L15, mitochondrial	L [auth M]	296	Homo sapiens	Mutation(s): 0
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Find proteins for Q9P015 (Homo sapiens) Explore Q9P015 Go to UniProtKB: Q9P015
PHAROS: Q9P015 GTEx: ENSG00000137547
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UniProt Group	Q9P015
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L16, mitochondrial	M [auth N]	251	Homo sapiens	Mutation(s): 0
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Find proteins for Q9NX20 (Homo sapiens) Explore Q9NX20 Go to UniProtKB: Q9NX20
PHAROS: Q9NX20 GTEx: ENSG00000166902
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UniProt Group	Q9NX20
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L17, mitochondrial	N [auth O]	175	Homo sapiens	Mutation(s): 0
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Find proteins for Q9NRX2 (Homo sapiens) Explore Q9NRX2 Go to UniProtKB: Q9NRX2
PHAROS: Q9NRX2 GTEx: ENSG00000158042
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UniProt Group	Q9NRX2
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L18, mitochondrial	O [auth P]	180	Homo sapiens	Mutation(s): 0
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Find proteins for Q9H0U6 (Homo sapiens) Explore Q9H0U6 Go to UniProtKB: Q9H0U6
PHAROS: Q9H0U6 GTEx: ENSG00000112110
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UniProt Group	Q9H0U6
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L19, mitochondrial	P [auth Q]	292	Homo sapiens	Mutation(s): 0
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Find proteins for P49406 (Homo sapiens) Explore P49406 Go to UniProtKB: P49406
PHAROS: P49406 GTEx: ENSG00000115364
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UniProt Group	P49406
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L20, mitochondrial	Q [auth R]	149	Homo sapiens	Mutation(s): 0
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Find proteins for Q9BYC9 (Homo sapiens) Explore Q9BYC9 Go to UniProtKB: Q9BYC9
PHAROS: Q9BYC9 GTEx: ENSG00000242485
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L21, mitochondrial	R [auth S]	205	Homo sapiens	Mutation(s): 0
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Find proteins for Q7Z2W9 (Homo sapiens) Explore Q7Z2W9 Go to UniProtKB: Q7Z2W9
GTEx: ENSG00000197345
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L27, mitochondrial	S [auth W]	148	Homo sapiens	Mutation(s): 0
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Find proteins for Q9P0M9 (Homo sapiens) Explore Q9P0M9 Go to UniProtKB: Q9P0M9
PHAROS: Q9P0M9 GTEx: ENSG00000108826
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L28, mitochondrial	T [auth X]	256	Homo sapiens	Mutation(s): 0
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Find proteins for Q13084 (Homo sapiens) Explore Q13084 Go to UniProtKB: Q13084
PHAROS: Q13084 GTEx: ENSG00000086504
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UniProt Group	Q13084
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L47, mitochondrial	U [auth Y]	250	Homo sapiens	Mutation(s): 0
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Find proteins for Q9HD33 (Homo sapiens) Explore Q9HD33 Go to UniProtKB: Q9HD33
PHAROS: Q9HD33 GTEx: ENSG00000136522
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UniProt Group	Q9HD33
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L30, mitochondrial	V [auth Z]	161	Homo sapiens	Mutation(s): 0
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Find proteins for Q8TCC3 (Homo sapiens) Explore Q8TCC3 Go to UniProtKB: Q8TCC3
PHAROS: Q8TCC3 GTEx: ENSG00000185414
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UniProt Group	Q8TCC3
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L43, mitochondrial	W [auth b]	215	Homo sapiens	Mutation(s): 0
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Find proteins for Q8N983 (Homo sapiens) Explore Q8N983 Go to UniProtKB: Q8N983
PHAROS: Q8N983 GTEx: ENSG00000055950
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L49, mitochondrial	X [auth g]	166	Homo sapiens	Mutation(s): 0
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Find proteins for Q13405 (Homo sapiens) Explore Q13405 Go to UniProtKB: Q13405
PHAROS: Q13405 GTEx: ENSG00000149792
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UniProt Group	Q13405
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L51, mitochondrial	Y [auth i]	128	Homo sapiens	Mutation(s): 0
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Find proteins for Q4U2R6 (Homo sapiens) Explore Q4U2R6 Go to UniProtKB: Q4U2R6
PHAROS: Q4U2R6 GTEx: ENSG00000111639
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UniProt Group	Q4U2R6
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L52, mitochondrial	Z [auth j]	123	Homo sapiens	Mutation(s): 0
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Find proteins for Q86TS9 (Homo sapiens) Explore Q86TS9 Go to UniProtKB: Q86TS9
PHAROS: Q86TS9 GTEx: ENSG00000172590
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UniProt Group	Q86TS9
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L54, mitochondrial	AA [auth l]	138	Homo sapiens	Mutation(s): 0
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Find proteins for Q6P161 (Homo sapiens) Explore Q6P161 Go to UniProtKB: Q6P161
PHAROS: Q6P161 GTEx: ENSG00000183617
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UniProt Group	Q6P161
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L55, mitochondrial	BA [auth m]	128	Homo sapiens	Mutation(s): 0
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Find proteins for Q7Z7F7 (Homo sapiens) Explore Q7Z7F7 Go to UniProtKB: Q7Z7F7
PHAROS: Q7Z7F7 GTEx: ENSG00000162910
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UniProt Group	Q7Z7F7
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein 63, mitochondrial	CA [auth o]	102	Homo sapiens	Mutation(s): 0
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Find proteins for Q9BQC6 (Homo sapiens) Explore Q9BQC6 Go to UniProtKB: Q9BQC6
PHAROS: Q9BQC6 GTEx: ENSG00000173141
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UniProt Group	Q9BQC6
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
Growth arrest and DNA damage-inducible proteins-interacting protein 1	DA [auth q]	222	Homo sapiens	Mutation(s): 0
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Find proteins for Q8TAE8 (Homo sapiens) Explore Q8TAE8 Go to UniProtKB: Q8TAE8
PHAROS: Q8TAE8 GTEx: ENSG00000179271
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UniProt Group	Q8TAE8
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
Unknown protein or protein extension	EA [auth t]	28	Homo sapiens	Mutation(s): 0
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitochondrial assembly of ribosomal large subunit protein 1	FA [auth u]	234	Homo sapiens	Mutation(s): 0
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Find proteins for Q96EH3 (Homo sapiens) Explore Q96EH3 Go to UniProtKB: Q96EH3
PHAROS: Q96EH3 GTEx: ENSG00000156928
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UniProt Group	Q96EH3
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
MIEF1 upstream open reading frame protein	GA [auth v]	70	Homo sapiens	Mutation(s): 0
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Find proteins for L0R8F8 (Homo sapiens) Explore L0R8F8 Go to UniProtKB: L0R8F8
PHAROS: L0R8F8
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UniProt Group	L0R8F8
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl carrier protein, mitochondrial	HA [auth w]	156	Homo sapiens	Mutation(s): 0
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Find proteins for O14561 (Homo sapiens) Explore O14561 Go to UniProtKB: O14561
PHAROS: O14561 GTEx: ENSG00000004779
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UniProt Group	O14561
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L37, mitochondrial	IA [auth 5]	423	Homo sapiens	Mutation(s): 0
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Find proteins for Q9BZE1 (Homo sapiens) Explore Q9BZE1 Go to UniProtKB: Q9BZE1
PHAROS: Q9BZE1 GTEx: ENSG00000116221
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UniProt Group	Q9BZE1
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Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L38, mitochondrial	JA [auth 6]	380	Homo sapiens	Mutation(s): 0
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Find proteins for Q96DV4 (Homo sapiens) Explore Q96DV4 Go to UniProtKB: Q96DV4
GTEx: ENSG00000204316
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UniProt Group	Q96DV4
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Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L41, mitochondrial	KA [auth 9]	137	Homo sapiens	Mutation(s): 0
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Find proteins for Q8IXM3 (Homo sapiens) Explore Q8IXM3 Go to UniProtKB: Q8IXM3
PHAROS: Q8IXM3 GTEx: ENSG00000182154
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UniProt Group	Q8IXM3
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L2, mitochondrial	NA [auth D]	305	Homo sapiens	Mutation(s): 0
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Find proteins for Q5T653 (Homo sapiens) Explore Q5T653 Go to UniProtKB: Q5T653
PHAROS: Q5T653 GTEx: ENSG00000112651
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UniProt Group	Q5T653
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L3, mitochondrial	OA [auth E]	348	Homo sapiens	Mutation(s): 0
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Find proteins for P09001 (Homo sapiens) Explore P09001 Go to UniProtKB: P09001
PHAROS: P09001 GTEx: ENSG00000114686
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UniProt Group	P09001
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L10, mitochondrial	PA [auth I]	261	Homo sapiens	Mutation(s): 0
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Find proteins for Q7Z7H8 (Homo sapiens) Explore Q7Z7H8 Go to UniProtKB: Q7Z7H8
PHAROS: Q7Z7H8 GTEx: ENSG00000159111
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UniProt Group	Q7Z7H8
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L22, mitochondrial	QA [auth T]	206	Homo sapiens	Mutation(s): 0
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Find proteins for Q9NWU5 (Homo sapiens) Explore Q9NWU5 Go to UniProtKB: Q9NWU5
PHAROS: Q9NWU5 GTEx: ENSG00000082515
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UniProt Group	Q9NWU5
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L23, mitochondrial	RA [auth U]	153	Homo sapiens	Mutation(s): 0
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Find proteins for Q16540 (Homo sapiens) Explore Q16540 Go to UniProtKB: Q16540
PHAROS: Q16540 GTEx: ENSG00000214026
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UniProt Group	Q16540
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Reference Sequence

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Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L24, mitochondrial	SA [auth V]	216	Homo sapiens	Mutation(s): 0
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Find proteins for Q96A35 (Homo sapiens) Explore Q96A35 Go to UniProtKB: Q96A35
PHAROS: Q96A35 GTEx: ENSG00000143314
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UniProt Group	Q96A35
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Reference Sequence

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Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L42, mitochondrial	TA [auth a]	142	Homo sapiens	Mutation(s): 0
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Find proteins for Q9Y6G3 (Homo sapiens) Explore Q9Y6G3 Go to UniProtKB: Q9Y6G3
PHAROS: Q9Y6G3 GTEx: ENSG00000198015
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UniProt Group	Q9Y6G3
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Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L44, mitochondrial	UA [auth c]	332	Homo sapiens	Mutation(s): 0 EC: 3.1.26
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Find proteins for Q9H9J2 (Homo sapiens) Explore Q9H9J2 Go to UniProtKB: Q9H9J2
PHAROS: Q9H9J2 GTEx: ENSG00000135900
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UniProt Group	Q9H9J2
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Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L45, mitochondrial	VA [auth d]	306	Homo sapiens	Mutation(s): 0
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Find proteins for Q9BRJ2 (Homo sapiens) Explore Q9BRJ2 Go to UniProtKB: Q9BRJ2
PHAROS: Q9BRJ2
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UniProt Group	Q9BRJ2
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Reference Sequence

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Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L46, mitochondrial	WA [auth e]	279	Homo sapiens	Mutation(s): 0
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Find proteins for Q9H2W6 (Homo sapiens) Explore Q9H2W6 Go to UniProtKB: Q9H2W6
GTEx: ENSG00000259494
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UniProt Group	Q9H2W6
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Reference Sequence

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Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L48, mitochondrial	XA [auth f]	212	Homo sapiens	Mutation(s): 0
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Find proteins for Q96GC5 (Homo sapiens) Explore Q96GC5 Go to UniProtKB: Q96GC5
PHAROS: Q96GC5 GTEx: ENSG00000175581
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UniProt Group	Q96GC5
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Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L50, mitochondrial	YA [auth h]	158	Homo sapiens	Mutation(s): 0
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Find proteins for Q8N5N7 (Homo sapiens) Explore Q8N5N7 Go to UniProtKB: Q8N5N7
PHAROS: Q8N5N7 GTEx: ENSG00000136897
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UniProt Group	Q8N5N7
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Reference Sequence

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Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L53, mitochondrial	ZA [auth k]	112	Homo sapiens	Mutation(s): 0
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Find proteins for Q96EL3 (Homo sapiens) Explore Q96EL3 Go to UniProtKB: Q96EL3
GTEx: ENSG00000204822
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UniProt Group	Q96EL3
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Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl-tRNA hydrolase ICT1, mitochondrial	AB [auth p]	206	Homo sapiens	Mutation(s): 0 EC: 3.1.1.29
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Find proteins for Q14197 (Homo sapiens) Explore Q14197 Go to UniProtKB: Q14197
PHAROS: Q14197 GTEx: ENSG00000167862
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UniProt Group	Q14197
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Reference Sequence

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Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein S18a, mitochondrial	BB [auth r]	196	Homo sapiens	Mutation(s): 0
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Find proteins for Q9NVS2 (Homo sapiens) Explore Q9NVS2 Go to UniProtKB: Q9NVS2
PHAROS: Q9NVS2 GTEx: ENSG00000096080
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UniProt Group	Q9NVS2
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Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein S30, mitochondrial	CB [auth s]	439	Homo sapiens	Mutation(s): 0
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Find proteins for Q9NP92 (Homo sapiens) Explore Q9NP92 Go to UniProtKB: Q9NP92
PHAROS: Q9NP92 GTEx: ENSG00000112996
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UniProt Group	Q9NP92
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Reference Sequence

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Entity ID: 38
Molecule	Chains	Length	Organism	Image
16S ribosomal RNA	LA [auth A]	1,559	Homo sapiens
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Entity ID: 39
Molecule	Chains	Length	Organism	Image
mitochondrial tRNAVal	MA [auth B]	69	Homo sapiens
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Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PNS Query on PNS Download Ideal Coordinates CCD File SDF format, chain FB [auth v] MOL2 format, chain FB [auth v]	FB [auth v]	4'-PHOSPHOPANTETHEINE C₁₁ H₂₃ N₂ O₇ P S JDMUPRLRUUMCTL-VIFPVBQESA-N		Interactions Focus chain FB [auth v] Interactions & Density Focus chain FB [auth v]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain BD [auth r] SDF format, chain DB [auth 0] MOL2 format, chain BD [auth r] MOL2 format, chain DB [auth 0]	BD [auth r], DB [auth 0]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain BD [auth r] Focus chain DB [auth 0] Interactions & Density Focus chain BD [auth r] Focus chain DB [auth 0]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain AC [auth A] SDF format, chain AD [auth A] SDF format, chain BC [auth A] SDF format, chain CC [auth A] SDF format, chain DC [auth A] SDF format, chain EB [auth g] SDF format, chain EC [auth A] SDF format, chain FC [auth A] SDF format, chain GB [auth A] SDF format, chain GC [auth A] SDF format, chain HB [auth A] SDF format, chain HC [auth A] SDF format, chain IB [auth A] SDF format, chain IC [auth A] SDF format, chain JB [auth A] SDF format, chain JC [auth A] SDF format, chain KB [auth A] SDF format, chain KC [auth A] SDF format, chain LB [auth A] SDF format, chain LC [auth A] SDF format, chain MB [auth A] SDF format, chain MC [auth A] SDF format, chain NB [auth A] SDF format, chain NC [auth A] SDF format, chain OB [auth A] SDF format, chain OC [auth A] SDF format, chain PB [auth A] SDF format, chain PC [auth A] SDF format, chain QB [auth A] SDF format, chain QC [auth A] SDF format, chain RB [auth A] SDF format, chain RC [auth A] SDF format, chain SB [auth A] SDF format, chain SC [auth A] SDF format, chain TB [auth A] SDF format, chain TC [auth A] SDF format, chain UB [auth A] SDF format, chain UC [auth A] SDF format, chain VB [auth A] SDF format, chain VC [auth A] SDF format, chain WB [auth A] SDF format, chain WC [auth A] SDF format, chain XB [auth A] SDF format, chain XC [auth A] SDF format, chain YC [auth A] SDF format, chain ZB [auth A] SDF format, chain ZC [auth A] SDF format, chain YB [auth A] MOL2 format, chain AC [auth A] MOL2 format, chain AD [auth A] MOL2 format, chain BC [auth A] MOL2 format, chain CC [auth A] MOL2 format, chain DC [auth A] MOL2 format, chain EB [auth g] MOL2 format, chain EC [auth A] MOL2 format, chain FC [auth A] MOL2 format, chain GB [auth A] MOL2 format, chain GC [auth A] MOL2 format, chain HB [auth A] MOL2 format, chain HC [auth A] MOL2 format, chain IB [auth A] MOL2 format, chain IC [auth A] MOL2 format, chain JB [auth A] MOL2 format, chain JC [auth A] MOL2 format, chain KB [auth A] MOL2 format, chain KC [auth A] MOL2 format, chain LB [auth A] MOL2 format, chain LC [auth A] MOL2 format, chain MB [auth A] MOL2 format, chain MC [auth A] MOL2 format, chain NB [auth A] MOL2 format, chain NC [auth A] MOL2 format, chain OB [auth A] MOL2 format, chain OC [auth A] MOL2 format, chain PB [auth A] MOL2 format, chain PC [auth A] MOL2 format, chain QB [auth A] MOL2 format, chain QC [auth A] MOL2 format, chain RB [auth A] MOL2 format, chain RC [auth A] MOL2 format, chain SB [auth A] MOL2 format, chain SC [auth A] MOL2 format, chain TB [auth A] MOL2 format, chain TC [auth A] MOL2 format, chain UB [auth A] MOL2 format, chain UC [auth A] MOL2 format, chain VB [auth A] MOL2 format, chain VC [auth A] MOL2 format, chain WB [auth A] MOL2 format, chain WC [auth A] MOL2 format, chain XB [auth A] MOL2 format, chain XC [auth A] MOL2 format, chain YC [auth A] MOL2 format, chain ZB [auth A] MOL2 format, chain ZC [auth A] MOL2 format, chain YB [auth A]	AC [auth A] AD [auth A] BC [auth A] CC [auth A] DC [auth A] AC [auth A], AD [auth A], BC [auth A], CC [auth A], DC [auth A], EB [auth g], EC [auth A], FC [auth A], GB [auth A], GC [auth A], HB [auth A], HC [auth A], IB [auth A], IC [auth A], JB [auth A], JC [auth A], KB [auth A], KC [auth A], LB [auth A], LC [auth A], MB [auth A], MC [auth A], NB [auth A], NC [auth A], OB [auth A], OC [auth A], PB [auth A], PC [auth A], QB [auth A], QC [auth A], RB [auth A], RC [auth A], SB [auth A], SC [auth A], TB [auth A], TC [auth A], UB [auth A], UC [auth A], VB [auth A], VC [auth A], WB [auth A], WC [auth A], XB [auth A], XC [auth A], YB [auth A], YC [auth A], ZB [auth A], ZC [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain AC [auth A] Focus chain AD [auth A] Focus chain BC [auth A] Focus chain CC [auth A] Focus chain DC [auth A] Focus chain EB [auth g] Focus chain EC [auth A] Focus chain FC [auth A] Focus chain GB [auth A] Focus chain GC [auth A] Focus chain HB [auth A] Focus chain HC [auth A] Focus chain IB [auth A] Focus chain IC [auth A] Focus chain JB [auth A] Focus chain JC [auth A] Focus chain KB [auth A] Focus chain KC [auth A] Focus chain LB [auth A] Focus chain LC [auth A] Focus chain MB [auth A] Focus chain MC [auth A] Focus chain NB [auth A] Focus chain NC [auth A] Focus chain OB [auth A] Focus chain OC [auth A] Focus chain PB [auth A] Focus chain PC [auth A] Focus chain QB [auth A] Focus chain QC [auth A] Focus chain RB [auth A] Focus chain RC [auth A] Focus chain SB [auth A] Focus chain SC [auth A] Focus chain TB [auth A] Focus chain TC [auth A] Focus chain UB [auth A] Focus chain UC [auth A] Focus chain VB [auth A] Focus chain VC [auth A] Focus chain WB [auth A] Focus chain WC [auth A] Focus chain XB [auth A] Focus chain XC [auth A] Focus chain YB [auth A] Focus chain YC [auth A] Focus chain ZB [auth A] Focus chain ZC [auth A] Interactions & Density Focus chain AC [auth A] Focus chain AD [auth A] Focus chain BC [auth A] Focus chain CC [auth A] Focus chain DC [auth A] Focus chain EB [auth g] Focus chain EC [auth A] Focus chain FC [auth A] Focus chain GB [auth A] Focus chain GC [auth A] Focus chain HB [auth A] Focus chain HC [auth A] Focus chain IB [auth A] Focus chain IC [auth A] Focus chain JB [auth A] Focus chain JC [auth A] Focus chain KB [auth A] Focus chain KC [auth A] Focus chain LB [auth A] Focus chain LC [auth A] Focus chain MB [auth A] Focus chain MC [auth A] Focus chain NB [auth A] Focus chain NC [auth A] Focus chain OB [auth A] Focus chain OC [auth A] Focus chain PB [auth A] Focus chain PC [auth A] Focus chain QB [auth A] Focus chain QC [auth A] Focus chain RB [auth A] Focus chain RC [auth A] Focus chain SB [auth A] Focus chain SC [auth A] Focus chain TB [auth A] Focus chain TC [auth A] Focus chain UB [auth A] Focus chain UC [auth A] Focus chain VB [auth A] Focus chain VC [auth A] Focus chain WB [auth A] Focus chain WC [auth A] Focus chain XB [auth A] Focus chain XC [auth A] Focus chain YB [auth A] Focus chain YC [auth A] Focus chain ZB [auth A] Focus chain ZC [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-06-26

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-06-26
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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8QU5

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

GTPBP8 plays a role in mitoribosome formation in human mitochondria

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