New Super-Slow Substrates as novel Sirtuin-Inhibitors
Friedrich, F., Kalbas, D., Einsle, O., Jung, M., Schutkowski, M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NAD-dependent protein deacetylase sirtuin-2 | 304 | Homo sapiens | Mutation(s): 0  Gene Names: SIRT2, SIR2L, SIR2L2 EC: 3.5.1 (PDB Primary Data), 2.3.1 (UniProt), 2.3.1.286 (UniProt) | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8IXJ6 (Homo sapiens) Explore Q8IXJ6  Go to UniProtKB:  Q8IXJ6 | |||||
PHAROS:  Q8IXJ6 GTEx:  ENSG00000068903  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8IXJ6 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptide-based super-slow substrate TNFn-3 | 10 | Homo sapiens | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
WWE (Subject of Investigation/LOI) Query on WWE | H [auth B] | 3-dodecylsulfanyl-3-methyl-butanoic acid C17 H34 O2 S FVOHTIJLQOWWCZ-UHFFFAOYSA-N | |||
PEG Query on PEG | D [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
ZN Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | E [auth A], F [auth A], G [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
NIY Query on NIY | B | L-PEPTIDE LINKING | C9 H10 N2 O5 | TYR |
Length ( Å ) | Angle ( ˚ ) |
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a = 36.144 | α = 90 |
b = 74.318 | β = 94.28 |
c = 56.052 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
Aimless | data scaling |
autoPROC | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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German Research Foundation (DFG) | Germany | SFB 992 |
German Research Foundation (DFG) | Germany | 295/18-1 |