8QRY

Crystal structure of the yeast spindle body component Spc98

PDB DOI: https://doi.org/10.2210/pdb8QRY/pdb

Classification: CELL CYCLE
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-10-09 Released: 2024-04-03
Deposition Author(s): Bellini, D., Yatskevich, S., Barford, D.
Funding Organization(s): Medical Research Council (MRC, United Kingdom)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.87 Å
R-Value Free: 0.302
R-Value Work: 0.238
R-Value Observed: 0.241

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of the yeast spindle body component Spc98

Bellini, D., Yatskevich, S., Barford, D.

To be published.

Macromolecule Content

Total Structure Weight: 10.83 kDa
Atom Count: 806
Modelled Residue Count: 96
Deposited Residue Count: 96
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spindle pole body component	A	96	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: SPC98
UniProt
Find proteins for A0A8H4BVY6 (Saccharomyces cerevisiae) Explore A0A8H4BVY6 Go to UniProtKB: A0A8H4BVY6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A8H4BVY6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.87 Å
R-Value Free: 0.302
R-Value Work: 0.238
R-Value Observed: 0.241
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 28.304	α = 90
b = 45.284	β = 90
c = 65.569	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
DIALS	data reduction
DIALS	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-04-03

Deposition Author(s):

Funding Organization	Location	Grant Number
Medical Research Council (MRC, United Kingdom)	United Kingdom	--

Revision History (Full details and data files)

Version 1.0: 2024-04-03
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.