Download MendeleyCapra hircus reactive intermediate deaminase A - K78A
Rizzi, G., Visentin, C., Ricagno, S.To be published.
8QOP
Capra hircus reactive intermediate deaminase A - K78A
- PDB DOI: https://doi.org/10.2210/pdb8QOP/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Capra hircus
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2023-09-29 Released: 2024-06-26
- Funding Organization(s): University and Research - University of Milan
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.188
- R-Value Work: 0.161
- R-Value Observed: 0.163
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2-iminobutanoate/2-iminopropanoate deaminase | 140 | Capra hircus | Mutation(s): 1 Gene Names: RIDA |  | |
UniProt | |||||
Find proteins for P80601 (Capra hircus) Explore P80601 Go to UniProtKB: P80601 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P80601 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO (Subject of Investigation/LOI) Query on EDO | C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| NA (Subject of Investigation/LOI) Query on NA | D [auth B], E [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.188
- R-Value Work: 0.161
- R-Value Observed: 0.163
- Space Group: P 21 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 88.61 | α = 90 |
| b = 88.61 | β = 90 |
| c = 88.61 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| MoRDa | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-06-26 Deposition Author(s): Rizzi, G., Visentin, C., Ricagno, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| University and Research - University of Milan | Italy | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-06-26
Type: Initial release
