8QOK

Capra hircus reactive intermediate deaminase A mutant - E124A

PDB DOI: https://doi.org/10.2210/pdb8QOK/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Capra hircus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2023-09-29 Released: 2024-06-26
Deposition Author(s): Rizzi, G., Visentin, C., Ricagno, S.
Funding Organization(s): University and Research - University of Milan

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free: 0.189
R-Value Work: 0.155
R-Value Observed: 0.156

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Capra hircus reactive intermediate deaminase A mutant - E124A

Rizzi, G., Visentin, C., Ricagno, S.

To be published.

Macromolecule Content

Total Structure Weight: 29.07 kDa
Atom Count: 2,298
Modelled Residue Count: 270
Deposited Residue Count: 280
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
2-iminobutanoate/2-iminopropanoate deaminase	A, B	140	Capra hircus	Mutation(s): 1 Gene Names: RIDA
UniProt
Find proteins for P80601 (Capra hircus) Explore P80601 Go to UniProtKB: P80601
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P80601
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free: 0.189
R-Value Work: 0.155
R-Value Observed: 0.156
Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.461	α = 90
b = 88.461	β = 90
c = 88.461	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
MoRDa	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-06-26

Deposition Author(s):

Funding Organization	Location	Grant Number
University and Research - University of Milan	Italy	--

Revision History (Full details and data files)

Version 1.0: 2024-06-26
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.