8QOJ

human connexin-36 gap junction channel in complex with mefloquine

PDB DOI: https://doi.org/10.2210/pdb8QOJ/pdb
EM Map EMD-18540: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2023-09-29 Released: 2024-07-03
Deposition Author(s): Ding, X.Y., Blum, T.B., Korkhov, V.M.
Funding Organization(s): Swiss National Science Foundation

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.13 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural basis of connexin-36 gap junction channel inhibition.

Ding, X., Aureli, S., Vaithia, A., Lavriha, P., Schuster, D., Khanppnavar, B., Li, X., Blum, T.B., Picotti, P., Gervasio, F.L., Korkhov, V.M.

(2024) Cell Discov 10: 68-68

PubMed: 38890333 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41421-024-00691-y
Primary Citation of Related Structures:
8QOJ, 8R7P, 8R7Q

Organizational Affiliation

Laboratory of Biomolecular Research, Paul Scherrer Institute, Villigen, Switzerland.

Macromolecule Content

Total Structure Weight: 449.48 kDa
Atom Count: 17,202
Modelled Residue Count: 2,076
Deposited Residue Count: 3,960
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gap junction delta-2 protein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	330	Homo sapiens	Mutation(s): 0 Gene Names: GJD2 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UKL4 (Homo sapiens) Explore Q9UKL4 Go to UniProtKB: Q9UKL4
GTEx: ENSG00000159248
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9UKL4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
YMZ (Subject of Investigation/LOI) Query on YMZ Download Ideal Coordinates CCD File SDF format, chain M [auth A] SDF format, chain N [auth B] SDF format, chain O [auth C] SDF format, chain P [auth D] SDF format, chain Q [auth E] SDF format, chain R [auth F] SDF format, chain S [auth G] SDF format, chain T [auth H] SDF format, chain U [auth I] SDF format, chain V [auth J] SDF format, chain W [auth K] SDF format, chain X [auth L] MOL2 format, chain M [auth A] MOL2 format, chain N [auth B] MOL2 format, chain O [auth C] MOL2 format, chain P [auth D] MOL2 format, chain Q [auth E] MOL2 format, chain R [auth F] MOL2 format, chain S [auth G] MOL2 format, chain T [auth H] MOL2 format, chain U [auth I] MOL2 format, chain V [auth J] MOL2 format, chain W [auth K] MOL2 format, chain X [auth L]	M [auth A] N [auth B] O [auth C] P [auth D] Q [auth E] M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], R [auth F], S [auth G], T [auth H], U [auth I], V [auth J], W [auth K], X [auth L]	Mefloquine C₁₇ H₁₆ F₆ N₂ O XEEQGYMUWCZPDN-SWLSCSKDSA-N		Interactions Focus chain M [auth A] Focus chain N [auth B] Focus chain O [auth C] Focus chain P [auth D] Focus chain Q [auth E] Focus chain R [auth F] Focus chain S [auth G] Focus chain T [auth H] Focus chain U [auth I] Focus chain V [auth J] Focus chain W [auth K] Focus chain X [auth L] Interactions & Density Focus chain M [auth A] Focus chain N [auth B] Focus chain O [auth C] Focus chain P [auth D] Focus chain Q [auth E] Focus chain R [auth F] Focus chain S [auth G] Focus chain T [auth H] Focus chain U [auth I] Focus chain V [auth J] Focus chain W [auth K] Focus chain X [auth L]